Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00503
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    76   2e-15
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    76   2e-15
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    30   0.11 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   7.0  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    23   9.2  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 247
           V KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 136 VGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 247
           V KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 136 VGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 29.9 bits (64), Expect = 0.11
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 149 MMGCSQLACGHWKQMHYNQKP*TFKNCCFKD 57
           ++GC Q A   WK  HY+  P T    CF++
Sbjct: 199 VVGCGQSAAEIWKHCHYSLDPKTPLAMCFRN 229


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 183 SMCLPESRRTINDGMFTTCLRTLETNALQSETLNIQELLFQRLFIS 46
           +MCL +S ++ ND  F       E   LQ   L +++ +   LFIS
Sbjct: 767 AMCLIDSVQSFNDVSFEISKTEEERFLLQEYELAVRQHIVTGLFIS 812


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 145  WDVHNLLADTGNKCITIRNLKHSRIAVSKIIYFLKRIVS 29
            WD  + +A   N+ +++ +      ++SK+  FL R  S
Sbjct: 1346 WDRRSAIARKENRYMSVEDATSRESSISKVESFLSRFPS 1384


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 139 HPIIYCAPGLWQAH*LLSEISIRWRSSW 222
           HP +    GL Q H +   ++  W SSW
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSW 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,680
Number of Sequences: 5004
Number of extensions: 18592
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)