Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00503
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192     75   2e-14
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511     75   2e-14
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296...    75   2e-14
07_03_1357 - 25982861-25983068,25983354-25983361                       59   7e-10
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    28   2.1  
11_06_0181 + 20985960-20987825,20987904-20989169                       27   4.9  
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475...    26   6.4  
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    26   6.4  

>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
          Length = 195

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 250
           V +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 138 VGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181


>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
          Length = 218

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 250
           V +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 161 VGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204


>03_01_0382 +
           2961665-2961672,2962504-2962557,2962935-2963004,
           2963141-2963386,2967246-2967491,2968837-2968888,
           2969270-2969651,2970527-2970681,2971389-2971713,
           2975803-2975871,2976189-2976346,2976444-2976551,
           2976659-2977131
          Length = 781

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 250
           V +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 354 VGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397


>07_03_1357 - 25982861-25983068,25983354-25983361
          Length = 71

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 29/41 (70%), Positives = 32/41 (78%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 241
           V +Q+VNIPSFIVRL+S KHI FSL SP GG    RVKRKN
Sbjct: 4   VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 129 CLRT-LETNALQSETLNIQELLFQRLFIS 46
           C RT L T+ L S T +  EL FQR FIS
Sbjct: 607 CSRTFLATDPLLSNTSSSHELFFQRWFIS 635


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 190  REVNVLARVQAHNK*WDVHNLLADTGNKCITIRNLKHSRIAVSKII 53
            +++    +VQ H K  +V  +  +  NK +  R+ + ++ A+ KI+
Sbjct: 921  KQIGAKCKVQIHPKIGEVWAIYKNWSNKWVPSRSTRGTKYAIGKIV 966


>06_02_0139 +
           12247051-12247155,12247250-12247327,12247412-12247519,
           12247882-12247944,12248024-12248185,12248424-12248624,
           12248663-12248725,12248915-12249244,12249870-12250034,
           12250110-12251078
          Length = 747

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 97  IRNLKHSRIAVSKIIYFLKRIVSNLWWIAWIG 2
           +R + +  +  S I+YF   +++ LWWI + G
Sbjct: 203 LRLVPNILVCTSCIVYFSDDMLNALWWIRYDG 234


>01_01_0025 +
           188915-189132,190625-190705,191350-191506,191958-192161,
           192248-192356,192401-192496,192724-193994,194200-194384,
           194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 129 CLRT-LETNALQSETLNIQELLFQRLFIS 46
           C +T L T+ L S T +  EL FQR FIS
Sbjct: 580 CSKTFLATDHLLSNTSSSHELFFQRWFIS 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,284,053
Number of Sequences: 37544
Number of extensions: 121638
Number of successful extensions: 367
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)