Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00503
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   3e-18
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)                   28   1.6  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)         26   8.8  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 37/46 (80%), Positives = 44/46 (95%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGR 256
           VRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++KG+
Sbjct: 134 VRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQ 179


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 68  CFKDYLFLKKNCKQSMVDC 12
           CFK+  F+  NCK+S  DC
Sbjct: 382 CFKNPKFMLNNCKKSCTDC 400


>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
          Length = 259

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 129 CLRTLETNALQSETLN-IQELLFQRL 55
           CLR LE  ALQS  +N + +LL QRL
Sbjct: 224 CLRVLEEEALQSPEMNLVVQLLQQRL 249


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 212 LHRMEISERSQCACQSPGAQ*MMGCSQLACGHWKQMHY 99
           LHR  I+E+ QC  Q  G       + +A G+ K+  Y
Sbjct: 608 LHRTRINEKQQCRVQCNGGTVNPRYNDMAKGNEKRYRY 645


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 194 SERSQCACQSPGAQ*MMGCSQLACGH 117
           S +SQ  C S     ++GC+QL C H
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKH 251


>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
          Length = 147

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 175 LARVQAHNK*WDVHNLLADTG 113
           L R   HN  WD+ N+ A TG
Sbjct: 112 LTRDHLHNSQWDIINITAQTG 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,422,215
Number of Sequences: 59808
Number of extensions: 145562
Number of successful extensions: 371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)