Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00503
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    84   2e-17
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    30   0.46 
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    27   2.5  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    27   2.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   5.7  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    26   5.7  
AF067619-3|AAV28340.1|  153|Caenorhabditis elegans Hypothetical ...    25   10.0 
AF067619-2|AAC17566.2|  202|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 37/45 (82%), Positives = 43/45 (95%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 253
           VR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 136 VRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
            W03A3.2 protein.
          Length = 1540

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 80   MFKVSDCNAFVSSVRKQVVNIPSFIVRLDSGK 175
            +F  + CN+F+  +RKQ+ N+   I RL  GK
Sbjct: 1169 VFDQALCNSFIYKIRKQIENLEENIWRLAYGK 1200


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 206 RMEISERSQCACQSPGAQ*MMGCSQLACGHWKQMHYNQKP*TFKNCCFK 60
           RME   +  CA    G+    G S L C  W+  H++ K      CC++
Sbjct: 105 RMETLHKWGCATLERGS----GASHLTCNSWRAAHHSPKS---IGCCYE 146


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 206 RMEISERSQCACQSPGAQ*MMGCSQLACGHWKQMHYNQKP*TFKNCCFK 60
           RME   +  CA    G+    G S L C  W+  H++ K      CC++
Sbjct: 105 RMETLHKWGCATLERGS----GASHLTCNSWRAAHHSPKS---IGCCYE 146


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 151  K*WDVHNLLADTGNKCITIRNLKHSRIAVSKIIY 50
            K W VH + AD  +K   IR L    + ++ II+
Sbjct: 3326 KQWTVHTIAADINDKEKLIRELTKLNVGITGIIH 3359


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 159 RTINDGMFTTCLRTLETNALQSET 88
           RT+NDG+ TT     E  ALQS T
Sbjct: 107 RTLNDGLITTQAPNPEEYALQSGT 130


>AF067619-3|AAV28340.1|  153|Caenorhabditis elegans Hypothetical
           protein K03E5.2b protein.
          Length = 153

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 250
           IVRL SG +   S K   G G P  VK K+L++
Sbjct: 97  IVRLQSGTNQFESQKGMTGFGTPRDVKGKHLKR 129


>AF067619-2|AAC17566.2|  202|Caenorhabditis elegans Hypothetical
           protein K03E5.2a protein.
          Length = 202

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 250
           IVRL SG +   S K   G G P  VK K+L++
Sbjct: 146 IVRLQSGTNQYESQKGMTGFGTPRDVKGKHLKR 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,262,443
Number of Sequences: 27780
Number of extensions: 108917
Number of successful extensions: 315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)