Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00503
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...    76   5e-15
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...    76   7e-15
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.33 
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P...    28   1.8  
At4g34820.1 68417.m04941 expressed protein                             27   3.1  
At2g16480.1 68415.m01888 SWIB complex BAF60b domain-containing p...    26   5.5  
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof...    25   9.5  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 34/41 (82%), Positives = 38/41 (92%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 241
           V KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 138 VGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +2

Query: 119 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 253
           V +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 138 VGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 214 TSTEWRFQREVNVLARVQAHN 152
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 599

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 220 RTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTGNKCIT 98
           +TT+       E  ++A  ++HNK   V NL A+ G  CIT
Sbjct: 310 KTTAIAILMNDEGEIVAADRSHNKVLVVQNLSAEMGFTCIT 350


>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 191 LKSPFGGGRPGRVKRKNLRKGRVAERQ 271
           L SPF GG+PG ++   +  G    RQ
Sbjct: 283 LDSPFSGGKPGDLRSSQVPLGNQISRQ 309


>At2g16480.1 68415.m01888 SWIB complex BAF60b domain-containing
           protein / plus-3 domain-containing protein contains Pfam
           profiles PF02201: BAF60b domain of the SWIB complex,
           PF03126: Plus-3 domain
          Length = 383

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 107 FVSSVRKQVVNIPSFIVRLDSGKHIDF--SLKSPFGGGRPGRVK--RKNLRKGR 256
           F+   + Q  +I   IV  +   H+D   +L  P   G+  + K  +KN+RKGR
Sbjct: 220 FLKKEQNQADDIQGDIVDTEEPNHVDVDENLDHPVKSGKDKKRKTRKKNVRKGR 273


>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 629

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 70  AVSKIIYFLKRIVSNLWWIAWI 5
           AV  +   LK +  NL WIAWI
Sbjct: 194 AVKDLEIVLKYVKKNLKWIAWI 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,896,156
Number of Sequences: 28952
Number of extensions: 99739
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)