Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00501
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   6e-30
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.054
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   3.6  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         28   3.6  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  127 bits (306), Expect = 6e-30
 Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 16/101 (15%)
 Frame = +1

Query: 1   QTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEG 132
           QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAIEG
Sbjct: 4   QTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEG 63

Query: 133 TYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 255
           TYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLH
Sbjct: 64  TYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLH 104



 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 37/51 (72%), Positives = 47/51 (92%)
 Frame = +3

Query: 255 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 407
           Y+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 105 YIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 339 GDIVTIGECRPLSKTVRFNVLKV 407
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 142 QCRYPQSPLWEF*SLNQHSYGDACP 68
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = +1

Query: 7    EKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGR 186
            +KA Q   +   N K GM+    ++   +  G +T ++A++   + K         ++  
Sbjct: 3708 DKALQLAGSFMFNEKTGMRPTVPKYLLLITDGDQTDKKALDYIDLSKSSEAVKENGVQVY 3767

Query: 187  ILTG---VVQKMKMQRTIVIRRDYLHTYP 264
             ++    V   M+  RTI  R DY H +P
Sbjct: 3768 AVSSRPEVDTNMQDLRTIASRDDYAHAWP 3796


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 332 HVPEARRQMHGHIPVPFLEP 273
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 10  KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 186
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 187 ILTGVVQK 210
              G  Q+
Sbjct: 276 ARAGNAQR 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,408
Number of Sequences: 59808
Number of extensions: 288144
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)