Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00500X
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.24 
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    28   0.56 
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   3.0  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   4.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   4.0  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    24   9.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   9.1  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    24   9.1  

>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 90  NFLH-PGDWMIKLNISQGYFSSIGRKISSILLEGQYQGTS 206
           NF H P  W+   N+S GY++S  R I S LL      +S
Sbjct: 212 NFFHSPTKWITHSNVSNGYYTS--RNIMSFLLSNNTNTSS 249


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 YFSSIGRKISSILLEGQYQGTSISTFREGSGPSYELV 251
           Y   +   ++++++ G Y GT+I T+ +  G + E V
Sbjct: 369 YLDRLKNSLAAVIIAGDYLGTAIVTYEQPDGTTNEKV 405


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 245 LIRRSRSLPEGTDTGPLVLTLKKYRRNFATDTRKISLRN 129
           L R+   LPEG  T    LT  +YR NF+   +  ++++
Sbjct: 183 LQRKLMGLPEGGSTSGKHLTPPRYRPNFSPSRKAENVKS 221


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 179 KYRRNFATDTRKISLRNVQFYHPVPWVEKV 90
           ++RR +ATDT    LR+ +     PWV ++
Sbjct: 420 EWRRQWATDTMLSILRSKRSIKQEPWVREL 449


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 258  TCLPLGLASEPHLFASITCGSQRPCVQR 341
            TC+P  L S+  L   ITC +   C+++
Sbjct: 1305 TCIPTDLQSDGVLLKPITCENIESCLRK 1332


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 399 WICLGRPKGSRLVDTSTGVPF 337
           WI + R + +RL D +TG P+
Sbjct: 131 WIQVERERSNRLQDLTTGTPW 151


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 90  NFLHPGDWMIKLNISQGYFSSIGRKISSI 176
           NF H GD  IKLN    Y S   R  SS+
Sbjct: 607 NFTHTGDGSIKLNYIAMY-SETSRNWSSL 634


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 NISQGYFSSIGRKISSILLEGQYQGTSISTFREGSGPSYEL 248
           N+++ Y     +   S+ +E   +  +IS  ++ SGP+YE+
Sbjct: 157 NLARWYKFMDSQNAVSVTMEEFTKAVNISKKQKSSGPNYEI 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,004
Number of Sequences: 5004
Number of extensions: 39193
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)