Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00500X
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    29   1.3  
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467...    29   1.7  
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    28   3.9  
01_06_0223 + 27669759-27670286                                         28   3.9  
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911...    27   5.1  

>02_05_0902 + 32620668-32621209,32621847-32622258,32622471-32622675,
            32622712-32622806,32622945-32623557,32623652-32623820,
            32624392-32624749,32625226-32625336,32626207-32626561,
            32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 161  ATDTRKISLRNVQFYHPVPWVEKVWYRGVRKQLGVLSLRPCSTLE 27
            A+  R++  R +   H  PW +++W  G  K   +L+L+  S L+
Sbjct: 1086 ASAARRVFFRAI---HACPWSKRLWLDGFEKLSSILTLKELSDLQ 1127


>12_02_0281 +
           16744690-16744727,16744744-16745611,16746195-16746725,
           16747737-16748549
          Length = 749

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 429 SQLLQPEVPTWICLGRPKGSRLVDTSTGVPF 337
           S L  P++P W  L RPKG+ L+ T   + F
Sbjct: 225 SVLPLPQIPIWNFLHRPKGADLLPTKNALLF 255


>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 206 YQYLQGGIGTFL*VSMNDMPTPRAGFRATPFCFYNMRVAETLRAKGTPVLVSTRRLPF 379
           + Y+ G  GTF+ V+M  +     G R     +Y  ++A   R++ +PV      +PF
Sbjct: 329 WPYILGIAGTFILVTMGAVLVTE-GCRKIKLQYYGFKLASGARSESSPVTEVEPYIPF 385


>01_06_0223 + 27669759-27670286
          Length = 175

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 260 MPTPRAGFRATPFCFYN 310
           +P PR G R T FC++N
Sbjct: 84  LPCPRCGSRETKFCYFN 100


>01_01_1148 -
           9113728-9113835,9113952-9114035,9114831-9114992,
           9115120-9115224,9115584-9116216,9117412-9117496,
           9118426-9118520,9119083-9119241,9119968-9119997,
           9120100-9120306
          Length = 555

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -3

Query: 318 TRML*KQKGVALKPARGVGMSFILTHKKVPIPP 220
           T +L KQ+  A      V  S ILT KKVP PP
Sbjct: 313 TTVLAKQQHAAAAMVEFVTRSGILTAKKVPAPP 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,572,705
Number of Sequences: 37544
Number of extensions: 270944
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)