Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00500X
         (443 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   1.2  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    24   2.8  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   4.9  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    22   8.5  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 5   SMRPIFDFRELNKVVKIKHLTVFGHLGTKLSPPRGLDDKIEHFSGIFF 148
           S + + D  E N V    +L V  HL    +PP    D++EH     F
Sbjct: 341 SFQELIDIAEEN-VFGAGYLVVLSHLRGGRTPPETERDRLEHIVSDLF 387


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 337 CTQGLCDPHVIEAKRCGSEASPRGRH 260
           C + + +PH+  + RC +  + R +H
Sbjct: 374 CREDMVEPHITGSLRCPNRIARRQQH 399


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 310  VIEAKRCGSEASPRGRHVIHTNS*EGPD 227
            ++E+ +     +PRGRH   +NS E P+
Sbjct: 1369 LLESSQPAGGGTPRGRHSWASNSVEVPN 1396


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 VAETLRAKGTPVLVSTRRLPFGRPRQIQVGTS 412
           +AE L+AKG PV +      +   R+++  T+
Sbjct: 592 IAEALQAKGVPVQLCRILQDYFADRELEYDTA 623


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,612
Number of Sequences: 2352
Number of extensions: 10660
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37418568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)