Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00500X
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b prote...    27   6.1  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   6.1  
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 186 GQYQGTSISTFREGSGP 236
           G Y GTS+ +F+E SGP
Sbjct: 422 GAYSGTSLGSFKEWSGP 438


>Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 186 GQYQGTSISTFREGSGP 236
           G Y GTS+ +F+E SGP
Sbjct: 422 GAYSGTSLGSFKEWSGP 438


>AF098995-9|AAC67486.1|  295|Caenorhabditis elegans F-box b protein
           protein 19 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 20  FDFRELNKVVKIKHLTVFGHLGTKLSPPRGLDDK--IEHFSGIF 145
           FD++   K+VKI +    G L ++L+ P G  +K  IEHF+ +F
Sbjct: 69  FDYKSNQKIVKIDNPEQNGSL-SRLNLP-GFTEKQWIEHFANVF 110


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 317 VAETLRAKGTPVLVSTRRLPFGRPRQIQVGTSGCRS 424
           + E    KG P  VSTRR+P   P ++Q+  S   S
Sbjct: 49  LGEKFYVKGAPEFVSTRRIPI--PGELQMQMSNIHS 82


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 ELV*MTCLPLGLASEPHLFASITCGSQRPCVQR 341
           E+    CL   L ++P +F    CGSQ+P  ++
Sbjct: 2   EMTAWNCLYCTLINDPAIFICQGCGSQKPLTKK 34


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 ELV*MTCLPLGLASEPHLFASITCGSQRPCVQR 341
           E+    CL   L ++P +F    CGSQ+P  ++
Sbjct: 2   EMTAWNCLYCTLINDPAIFICQGCGSQKPLTKK 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,620,520
Number of Sequences: 27780
Number of extensions: 225209
Number of successful extensions: 475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)