Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00500X
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f...    28   3.3  
At4g31040.1 68417.m04408 proton extrusion protein-related contai...    27   4.3  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    27   5.7  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    27   7.5  
At2g32620.1 68415.m03982 cellulose synthase family protein simil...    26   10.0 

>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 330

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 263 ACHSY*LIRRSRSLPEGTDTGPLVLTLKKYRRNFATDTRKISLRN 129
           AC +  ++    + PE  D GP +  LK++ +NF +D + +++ N
Sbjct: 81  ACATQAILAILLNSPE-VDIGPELSALKEFTKNFPSDLKGLAINN 124


>At4g31040.1 68417.m04408 proton extrusion protein-related contains
           weak similarity to Proton extrusion protein pcxA
           (Swiss-Prot:P75028) [Synechocystis sp.]
          Length = 438

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 220 LKVLILVPWY*PSRSIDEILRPILEKY 140
           L VLIL+PW     + D +L P L++Y
Sbjct: 217 LAVLILIPWALDFLAHDYLLMPFLDRY 243


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 185 LKKYRRNFATDTRKISLRNVQFYHPVPWVEKVWYRGVRKQLGVLSLRPCS 36
           L  Y +    D   + LRN+ F   +P +      G     GV+ + PC+
Sbjct: 402 LTDYDKIIFIDADLLILRNIDFLFSMPEISATGNNGTLFNSGVMVIEPCN 451


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 141  IPEKCSILSSSPLG-GESLVPRCPKTV 64
            I +  + L+SSPL  G+S  PRCPK +
Sbjct: 1368 IEDYTNFLASSPLASGQSEGPRCPKVL 1394


>At2g32620.1 68415.m03982 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880], -9 [gi:9622890]
          Length = 757

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 325 DLACKGNSSASVY*TTSFWATKTNPSWNFRL 417
           +  C G+S  S Y + SFW      SW F +
Sbjct: 587 EFMCLGHSIQSWYVSQSFWRIVATSSWLFSI 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,078,279
Number of Sequences: 28952
Number of extensions: 212886
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)