Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00499
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   105   7e-24
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    47   3e-06
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    43   4e-05
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  105 bits (252), Expect = 7e-24
 Identities = 46/85 (54%), Positives = 63/85 (74%)
 Frame = +3

Query: 507 REGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 686
           ++  LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T V  
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVRE 205

Query: 687 GDRASFSKVVEAIKTNFNERYEELR 761
            D+   + +V A+  NF+ +Y+E R
Sbjct: 206 EDKNELASIVSAVDANFSAKYDESR 230



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +3

Query: 132 AQEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARRLYFSVV*KCP 293
           A+  +  LF  RP++F IGQ IQP RDLSRFV+WP+YIR+Q RR   ++  K P
Sbjct: 19  AKTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXX 433
           ++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                   
Sbjct: 61  RRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGK 120

Query: 434 XXXXXXXRPNTIRSGTNTVTKLVEKRR 514
                  +P  ++ G N V  L+E ++
Sbjct: 121 SAQDVSKKPYNVKYGLNHVVALIEAKK 147


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 40/83 (48%)
 Frame = +3

Query: 510 EGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 689
           E  LV++A D+ P++++  +P LC    VPY     K  LG   + K  T   +  V  G
Sbjct: 69  EKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGG 127

Query: 690 DRASFSKVVEAIKTNFNERYEEL 758
            +   SKV E     + E YEE+
Sbjct: 128 KKKDMSKVEE-----YKESYEEI 145


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 632
           A   + + +R     +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 36  ANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 361  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSLLA-WMRIYLGHLTNLDK 212
            L+N ++ L  +L + L  +V++  H  TTL Y+L    + IY   + + DK
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDK 1740


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 260 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 361
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 442 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 272
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,225
Number of Sequences: 5004
Number of extensions: 57478
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)