Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00499
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 149 2e-36
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 126 2e-29
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 107 7e-24
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 48 1e-05
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 44 1e-04
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 42 4e-04
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 42 5e-04
07_03_1422 + 26462871-26463434,26463772-26463897 30 1.8
07_03_1413 - 26396426-26396890 30 1.8
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 28 7.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 149 bits (362), Expect = 2e-36
Identities = 84/205 (40%), Positives = 113/205 (55%), Gaps = 2/205 (0%)
Frame = +3
Query: 153 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARRLYFSVV*KCPLRSTNLPRHWTR- 329
LFEKRPK F IG + P +DL RFV+WPK +RIQ +R K P R +
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 330 LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSWSRR 509
L F + ++ + PI +
Sbjct: 84 LATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 141
Query: 510 EGALVV-IAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 686
A +V IAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V++
Sbjct: 142 SKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKN 201
Query: 687 GDRASFSKVVEAIKTNFNERYEELR 761
D+ FSK++EAIK NFN++++E+R
Sbjct: 202 EDKLEFSKILEAIKANFNDKFDEVR 226
Score = 61.3 bits (142), Expect = 8e-10
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
Q+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 59 QRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEG 117
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
+P ++ G N VT L+E+ +
Sbjct: 118 KTVEAKKPIVVKYGLNHVTYLIEQSK 143
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 126 bits (304), Expect = 2e-29
Identities = 54/81 (66%), Positives = 73/81 (90%)
Frame = +3
Query: 519 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 698
LVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V++ D+
Sbjct: 131 LVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKL 190
Query: 699 SFSKVVEAIKTNFNERYEELR 761
FSK++EAIK+NFN++++E+R
Sbjct: 191 EFSKILEAIKSNFNDKFDEVR 211
Score = 58.0 bits (134), Expect = 8e-09
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = +3
Query: 108 PIGGQKG*AQEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARR 263
P+ +K A LFEKRPK F IG + P +DL RFVRWPK +RIQ +R
Sbjct: 10 PVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQR 61
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 376
Q+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 60 QRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 107 bits (258), Expect = 7e-24
Identities = 72/205 (35%), Positives = 99/205 (48%), Gaps = 2/205 (0%)
Frame = +3
Query: 153 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARRLYFSVV*KCPLRSTNLPRHWTR- 329
LFEKRPK F IG + P +DL RFV+WPK +RIQ +R K P R +
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 330 LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSWSRR 509
L F + ++ + PI +
Sbjct: 68 LATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 125
Query: 510 EGALVV-IAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 686
A +V IAHDVDPIELV++LPALCRKM +VH+KT + L LT V++
Sbjct: 126 SKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVKN 171
Query: 687 GDRASFSKVVEAIKTNFNERYEELR 761
D+ FSK++EAIK NFN++++E+R
Sbjct: 172 EDKLEFSKILEAIKANFNDKFDEVR 196
Score = 61.3 bits (142), Expect = 8e-10
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
Q+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 QRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEG 101
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
+P ++ G N VT L+E+ +
Sbjct: 102 KTVEAKKPIVVKYGLNHVTYLIEQSK 127
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3
Query: 504 RREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTN 677
R + L +IA ++ PI+++ +P LC + +PY V K L R TC L LT
Sbjct: 58 RGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTK 117
Query: 678 VESGDRASFSKVVEAIKTNFNERYEEL 758
G+ V E +KT++++ E+
Sbjct: 118 PAKGELE--EDVKEKLKTDYDQVMSEV 142
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +3
Query: 504 RREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 683
R L VIA ++ PI+++ +P LC + +PY V K L K TC L +
Sbjct: 58 RGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTK 117
Query: 684 SGDRASFSKVVEAIKTNFNERYEEL 758
+V E +K++++ E+
Sbjct: 118 PAKGEINEEVKEKLKSDYDHVVAEV 142
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRK 650
A + + +R VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 37 ANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP 96
Query: 651 TCTCLALTNVESGDRASFSKVVEAIK 728
C +N S R + + AI+
Sbjct: 97 VIACSVTSNEASNLRDPINNLKVAIE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRK 650
A + + +R VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 39 ANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98
Query: 651 TCTCLALTNVESGDRASFSKVVEAIK 728
C +N S + + +AI+
Sbjct: 99 VIACSVTSNEGSQLKTPIQNLKDAIE 124
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 275 AEVQPSGLDADILGPSYKSGQVTSWLNALTNGKVLWPLLEE 153
A +P+ L + P Y G+V + + +T G+ L P LEE
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEE 108
>07_03_1413 - 26396426-26396890
Length = 154
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 275 AEVQPSGLDADILGPSYKSGQVTSWLNALTNGKVLWPLLEE 153
A +P+ L + P Y G+V + + +T G+ L P LEE
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEE 62
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 126 G*AQEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 242
G +++ ++LFE+ K + GQ + +R VRW +Y
Sbjct: 211 GISEDSMDHLFEQAAKQWQRGQSLPLENRRARVVRWLQY 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,586,537
Number of Sequences: 37544
Number of extensions: 448932
Number of successful extensions: 1289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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