Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00499
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 7e-36
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 121 7e-28
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 45 6e-05
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 36 0.048
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 0.77
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 30 1.8
SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 29 5.5
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 7.2
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 7.2
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 147 bits (357), Expect = 7e-36
Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 1/204 (0%)
Frame = +3
Query: 153 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARRLYFSVV*KCPLRSTNLPRHWTRL 332
L EKRP+NF IG IQP RDLSRFVRWP+Y+++Q ++ K P + R
Sbjct: 31 LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90
Query: 333 QLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQSPSWSRRE 512
+ + P+ S +
Sbjct: 91 STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENK 150
Query: 513 GALVV-IAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 689
A +V IAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 151 KAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQE 210
Query: 690 DRASFSKVVEAIKTNFNERYEELR 761
D+ S + ++E++KTN+NER++E+R
Sbjct: 211 DKNSLNNLIESVKTNYNERFDEIR 234
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/86 (39%), Positives = 46/86 (53%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
QK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 66 QKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGK 125
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
+P ++ G N +T LVE ++
Sbjct: 126 EEAPGKKPMLVKYGINHITSLVENKK 151
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 121 bits (291), Expect = 7e-28
Identities = 51/85 (60%), Positives = 70/85 (82%)
Frame = +3
Query: 507 REGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 686
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 118
Query: 687 GDRASFSKVVEAIKTNFNERYEELR 761
D+ S + ++E++KTN+NER++E+R
Sbjct: 119 EDKNSLNNLIESVKTNYNERFDEIR 143
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 344 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKRR 514
LFK+L KYRPET +P ++ G N +T LVE ++
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKK 60
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 522 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 695
+V+A D +P+E++L LP LC VPY V+ K+ LG V R C N S +
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEGSQLK 172
Query: 696 ASFSKVVEAIK 728
+ AI+
Sbjct: 173 PQIQTLQNAIE 183
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 510 EGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 620
E V++A DV PI+++ +P +C +PY V K
Sbjct: 114 EKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/64 (26%), Positives = 35/64 (54%)
Frame = +3
Query: 573 ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 752
A C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263
Query: 753 ELRS 764
++ S
Sbjct: 1264 DIFS 1267
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 495 SWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 632
S +RE L +++++ D V + ALC + G+P V +LG
Sbjct: 48 SLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 487 SHQAGREEKAHLWS-SLMMLIPLSWSFSCQRYAVKWAYHTALSRASPASVHLYTARHAH 660
SH+A E SL+ + ++ F + W+Y AL+ SPA+V++ ++ H
Sbjct: 49 SHEATEELARQAEKMSLLQVAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSGH 107
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 609 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRS 764
VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++ S
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDIFS 1139
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 241 ISASRPEGCTSASSESAPSDQPIYPDTG 324
I+A T+ASSE+APS P PD G
Sbjct: 34 IAARMGSASTAASSEAAPSSAPSMPDYG 61
>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 600 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRS 764
+ +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++ S
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDIFS 390
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 766 VLRSSS*RSLKFVLMASTTFEKEARSPDST 677
++RS S RSL L ST+ EKEA+ D+T
Sbjct: 119 IIRSGSSRSLPECLRISTSKEKEAKDIDNT 148
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 709 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 608
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 457 PLWWRLIFLGNLSFSSFPQPLFPG 386
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,743,989
Number of Sequences: 59808
Number of extensions: 468723
Number of successful extensions: 1331
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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