Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00499
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 138 4e-33
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 105 3e-23
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 60 1e-09
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 60 1e-09
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 45 7e-05
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 42 5e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.032
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 31 0.90
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 31 0.90
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 138 bits (334), Expect = 4e-33
Identities = 78/210 (37%), Positives = 109/210 (51%), Gaps = 1/210 (0%)
Frame = +3
Query: 135 QEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARRLYFSVV*KCPLRSTNLP 314
+E + LFEKR +NF IGQ IQP +D++RFV+WPKYIR+Q + K P
Sbjct: 26 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85
Query: 315 RHWTRLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPIPSDPAQTQS 491
R AF + + +R T +
Sbjct: 86 TALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTIT 145
Query: 492 PSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 671
R LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL
Sbjct: 146 RLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 205
Query: 672 TNVESGDRASFSKVVEAIKTNFNERYEELR 761
+V D+++ +K+VE + NF+ER+EE+R
Sbjct: 206 VDVNPEDKSALNKLVETVNNNFSERHEEIR 235
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/86 (45%), Positives = 49/86 (56%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
Q A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 67 QSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGK 126
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
RPNT+R G NT+T+LVE RR
Sbjct: 127 KEEVTKRPNTVRHGVNTITRLVETRR 152
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 105 bits (252), Expect = 3e-23
Identities = 46/85 (54%), Positives = 64/85 (75%)
Frame = +3
Query: 507 REGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 686
R LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNP 190
Query: 687 GDRASFSKVVEAIKTNFNERYEELR 761
D+++ +K+VE + NF+ER+EE+R
Sbjct: 191 EDKSALNKLVETVNNNFSERHEEIR 215
Score = 68.5 bits (160), Expect = 5e-12
Identities = 39/86 (45%), Positives = 49/86 (56%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
Q A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 67 QSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES------------------- 107
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
RPNT+R G NT+T+LVE RR
Sbjct: 108 -TEVTKRPNTVRHGVNTITRLVETRR 132
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +3
Query: 135 QEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQ 254
+E + LFEKR +NF IGQ IQP +D++RFV+WPKYIR+Q
Sbjct: 26 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQ 65
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +3
Query: 135 QEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQ 254
+E + LFEKR +NF IGQ IQP +D++RFV+WPKYIR+Q
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQ 168
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLD 325
Q A+LQ+RLKVPP INQF LD
Sbjct: 170 QSAILQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +3
Query: 135 QEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQ 254
+E + LFEKR +NF IGQ IQP +D++RFV+WPKYIR+Q
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQ 168
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 379
Q A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 170 QSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +3
Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRK 650
A + + +R ++V+A D +P+E++L LP LC VPY V+ K+ LG V R
Sbjct: 39 ANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRP 98
Query: 651 TCTCLALTNVESGDRASFSKVVEAIK 728
N S ++ K+ E ++
Sbjct: 99 VIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/75 (22%), Positives = 37/75 (49%)
Frame = +3
Query: 504 RREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 683
R E + ++A +V PI++ +P +C + +PY + + +LG V + + L
Sbjct: 82 RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSILIFVKPS 141
Query: 684 SGDRASFSKVVEAIK 728
+ + +V EA++
Sbjct: 142 GDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 421 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 302
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 459 PIPSDPAQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 638
P PS+P T P+ +++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 639 VHRKTCT 659
+ K T
Sbjct: 508 QNHKFAT 514
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 459 PIPSDPAQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 638
P PS+P T P+ +++ AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 639 VHRKTCT 659
+ K T
Sbjct: 508 QNHKFAT 514
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 294 LRSTNLPRHWTRLQLRA 344
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,445,695
Number of Sequences: 27780
Number of extensions: 341291
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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