Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00499
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 134 6e-32
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 130 1e-30
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 48 5e-06
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 3e-04
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 3e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 3e-04
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 3e-04
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.5
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.0
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 7.9
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami... 28 7.9
At4g19060.1 68417.m02808 disease resistance protein-related cont... 28 7.9
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 134 bits (324), Expect = 6e-32
Identities = 60/86 (69%), Positives = 74/86 (86%)
Frame = +3
Query: 504 RREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 683
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 684 SGDRASFSKVVEAIKTNFNERYEELR 761
+ D+ FSK++EAIK NFN++YEE R
Sbjct: 200 NEDKLEFSKILEAIKANFNDKYEEYR 225
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/86 (39%), Positives = 46/86 (53%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
QK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 58 QKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEG 116
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
+P ++ G N VT L+E+ +
Sbjct: 117 KPSESKKPIVVKYGLNHVTYLIEQNK 142
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +3
Query: 111 IGGQKG*AQEDREYLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARR 263
+ +K A++ LFE+RPK F IG + P +DLSR+++WPK IR+Q ++
Sbjct: 9 VAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 59
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 130 bits (314), Expect = 1e-30
Identities = 59/86 (68%), Positives = 72/86 (83%)
Frame = +3
Query: 504 RREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 683
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 684 SGDRASFSKVVEAIKTNFNERYEELR 761
+ D+ FSK++EAIK NFN++YEE R
Sbjct: 199 NEDKLEFSKILEAIKANFNDKYEEYR 224
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/86 (40%), Positives = 46/86 (53%)
Frame = +2
Query: 257 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 436
QK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 57 QKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEG 115
Query: 437 XXXXXXRPNTIRSGTNTVTKLVEKRR 514
+P ++ G N VT L+E+ +
Sbjct: 116 KPAESKKPIVVKYGLNHVTYLIEQNK 141
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = +3
Query: 153 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQARR 263
LFE+RPK F IG + P +DLSR+++WPK IR+Q ++
Sbjct: 22 LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQK 58
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 504 RREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 683
R + L VIA ++ PI+++ LP LC + GVPY V K L K TC L ++
Sbjct: 64 RGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLK 123
Query: 684 SGDRASFSKVVEAIKTNFNERYEELR 761
++ + +KT++ + ++++
Sbjct: 124 PAKGDLTAEELAKLKTDYEQVSDDIK 149
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRK 650
A + + +R VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 39 ANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98
Query: 651 TCTCLALTNVESGDRASFSKVVEAIK 728
C +N S ++ + +AI+
Sbjct: 99 VIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRK 650
A + + +R VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 39 ANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98
Query: 651 TCTCLALTNVESGDRASFSKVVEAIK 728
C +N S ++ + +AI+
Sbjct: 99 VIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 522 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 695
VV+A D +P+E++L LP L VPY V K LG V R C +N S +
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLK 145
Query: 696 ASFSKVVEAIK 728
+ + +AI+
Sbjct: 146 SQIQHLKDAIE 156
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 477 AQTQSPSWSRREGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRK 650
A + + +R +V+A D +P+E++L LP L VPY V K LG V R
Sbjct: 39 ANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRP 98
Query: 651 TCTCLALTNVESGDRASFSKVVEAIK 728
C +N S ++ + +AI+
Sbjct: 99 VIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 472 SDGIGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 314
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 608 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALR 751
C+G VP CT D H+ + VW +LLE + E+++ LR
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLR 408
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 508 LLDQLGDCVCAGSDGIGPLWWRLI 437
LLDQ D C G G GP W ++
Sbjct: 215 LLDQAFDLYCRGVIGFGPFWEHML 238
>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 954
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 253 RPEGCTSASSESAPSDQPIYPDTGQDYS*GPFQDFGE 363
R GC +ASS S+ S+ TG D++ FQ + E
Sbjct: 151 RDSGCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDE 187
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 693 RASFSKVVEAIKTNFNERYEELRS 764
++ F K +E IK++FNE YE+ S
Sbjct: 18 KSEFDKELEKIKSSFNEEYEKWSS 41
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,453
Number of Sequences: 28952
Number of extensions: 331296
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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