Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00498
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    30   0.40 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   4.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.4  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   6.4  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 527 KYEKPSPLEVDQ*QQTKTDIISY-YVDTLIRTGDSAVQNPADAP 655
           K EK  P E+   QQ K  + ++ Y+DT++    +A   P D+P
Sbjct: 745 KKEKALPDELSDSQQRKLRVWAFRYLDTVVSRSGTATTTPTDSP 788


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 515 RYRKKYEKPSPLEVDQ*QQTKTDIISY-YVDTLIRTGDSAVQNPADAPHSNVDIDALIRK 691
           +  K  ++ +P ++   QQ K + +S  +   L  TG+ +  NPA    + +D+  L+  
Sbjct: 70  KQEKNVQQQNPEKISTLQQVKEEEVSNTFSAPLNATGNFSSANPASIDLAYLDLQKLLTL 129

Query: 692 PYYYIPLQS*TS 727
           P +    Q  TS
Sbjct: 130 PDHSKETQEKTS 141


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 588  IISVLVCCY*STSKGEGFSY 529
            + S+L C Y   + G+GFSY
Sbjct: 1266 LFSILTCIYNRITSGQGFSY 1285


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 508 DTCTSNNKFF*EYRYRFYVTRNKCIV 431
           D C SN KFF  Y++ FY     C+V
Sbjct: 149 DVCFSNQKFF--YQFLFYGFSAACMV 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,124
Number of Sequences: 5004
Number of extensions: 55543
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)