Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00498
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    29   3.0  
SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)                 29   5.2  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           29   5.2  

>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 624 TAQYRTLRMPLTPTSTSTH*YANLIITYPCNHK 722
           T ++RTL +P TP  +++  YA  +  YP  H+
Sbjct: 593 TIRHRTLHLPHTPPRSASTPYATELRIYPIRHR 625



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 630  QYRTLRMPLTPTSTSTH*YANLIITYPCNHK 722
            ++RTL +P TP   ++  YA  +  YP  H+
Sbjct: 931  RHRTLHLPHTPPHATSTPYATALCIYPIRHR 961


>SB_41741| Best HMM Match : DUF59 (HMM E-Value=6.1e-08)
          Length = 476

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   TRVPQRTGAPFCSYFKPRPPR*LFTWNHF 88
           T +P +   P   ++ P PPR  FTW H+
Sbjct: 194 TGIPIKVSQPLICFY-PDPPRMAFTWRHW 221


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 97  YASKMVPRK*LPWRAGLKIATERRASSLW 11
           Y+ K + ++ +PW +G K+ T R A+S W
Sbjct: 844 YSDKGIEKR-MPWISGAKLTTSRSATSNW 871


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,786,681
Number of Sequences: 59808
Number of extensions: 394299
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)