Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00498
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    30   1.8  
At1g77700.1 68414.m09047 pathogenesis-related thaumatin family p...    29   4.3  
At5g43990.2 68418.m05382 SET domain-containing protein identical...    28   5.6  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    28   5.6  

>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +1

Query: 643 CGCPSLQ----RRHRRIDTQTLLLHTPAIINITYF 735
           CGCPSL+     R R +D +T  +  P++  +T +
Sbjct: 193 CGCPSLEVLSVHRERNVDVETFTIVVPSLQRLTIY 227


>At1g77700.1 68414.m09047 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 356

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 437 YSNYDSKIAFFFIKHDFLMIIIY 369
           Y NYDS    F + HDF + +IY
Sbjct: 315 YFNYDSNQVSFILDHDFYIYMIY 337


>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 581 DIISYYVDTLIRTGDSAVQNPADAPHSNVDIDAL 682
           DI S Y+D      DSA Q P + P    +IDAL
Sbjct: 324 DICSCYLDLATNGRDSANQLPKNLPFVTTNIDAL 357


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 581 DIISYYVDTLIRTGDSAVQNPADAPHSNVDIDAL 682
           DI S Y+D      DSA Q P + P    +IDAL
Sbjct: 301 DICSCYLDLATNGRDSANQLPKNLPFVTTNIDAL 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,155,897
Number of Sequences: 28952
Number of extensions: 257963
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)