Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00497X
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0621 + 4574426-4574657,4574751-4574852,4575637-4575908,457...    29   3.5  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    29   3.5  
01_01_0855 - 6666854-6666969,6667107-6667230,6667679-6667849,666...    28   6.1  
09_06_0085 - 20760072-20761085                                         27   8.0  
07_01_0594 + 4428440-4429837                                           27   8.0  
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774...    27   8.0  

>03_01_0621 +
           4574426-4574657,4574751-4574852,4575637-4575908,
           4576207-4576395
          Length = 264

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 538 TGNTSSTYPYLSPDAILTPSLDQYTFSGCGYPSTSQGRLSSAPAVSVGGADNILVDT 368
           T +  + YP LSP+ +  P    Y  +    P  S     S+PA  V  A    +DT
Sbjct: 26  TASDYAHYPRLSPEDVAPPPPPSYHAAASSAPPYSGNPYVSSPAGGVAPASKNTMDT 82


>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 360  TAPVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASG 503
            ++P  T   S PP     A L +P  +  YP  +N+    +G  ++SG
Sbjct: 1398 SSPAETSFSSPPPATQFSAPLMVPT-IQRYPSMDNITTPNNGSGLSSG 1444


>01_01_0855 -
           6666854-6666969,6667107-6667230,6667679-6667849,
           6668171-6668276,6668356-6668532,6669213-6669442
          Length = 307

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 505 SPDAILTPSLDQYTFSG----CGYPSTSQGRLSSAPAVSVGGADNIL 377
           SPD   + S   YT++G    C +   S G   S+PA+SVG + N++
Sbjct: 143 SPDG--SSSFTAYTYAGELPTCAFGFNSNGVRVSSPAMSVGHSYNLM 187


>09_06_0085 - 20760072-20761085
          Length = 337

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 148 GEGSPATLLMEVRA-YKQDDTPSDNKYLVSRPGE 246
           GE +   +++EVR  +  DD P   +YLV + GE
Sbjct: 152 GETASEVVILEVRTEFGHDDPPEFGRYLVEQLGE 185


>07_01_0594 + 4428440-4429837
          Length = 465

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 211 RAYRLVCTPEPPSVTWPGFLLRCMLDTRIPRAPRRSVVLLE-ERFLWLRTMYCCMAPWD 38
           R  +    P   S+ W  + L   +DT    A   ++VL+  ER  W + MY C   WD
Sbjct: 320 RVDKFADAPRRESIRWARWWLA--VDTASSSAGGGALVLVATERRWWKQKMYMCAFRWD 376


>03_04_0112 -
           17375871-17376099,17377021-17377054,17377237-17377470,
           17377636-17377705
          Length = 188

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 487 TPSLDQYTFSGCGYPSTSQGRLSSAPAVSVGGADNILVDTGAVNRGT 347
           T S    +FSGC +PS++    ++  +  VG     L   G +  GT
Sbjct: 95  TLSSSDPSFSGCTFPSSASAAGTTGLSPGVGTGTGTLSPGGGIGTGT 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,872
Number of Sequences: 37544
Number of extensions: 291467
Number of successful extensions: 1107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)