Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00497X
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              32   0.005
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.025
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.025
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.40 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.70 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 366 PVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDK 509
           P   R   A  TL  G  + L C   G P PE + W  DG R+++ ++
Sbjct: 393 PPQIRQAFAEETLQPGPSMFLKCVASGNPTPE-ITWELDGKRLSNTER 439



 Score = 28.3 bits (60), Expect = 0.057
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 360 TAPVSTRILSAPPTLTAGAELSLPCEVDGYPQPENVYWSKDG 485
           TAP+   I  +  T+  G   +  C V G P  + V W KDG
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPATFTCNVRGNP-IKTVSWLKDG 345



 Score = 27.5 bits (58), Expect = 0.100
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 399  TLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDK 509
            T T   ++ LPC   G P PE V W   G  + S D+
Sbjct: 1287 TATYKEDVKLPCLAVGVPAPE-VTWKVRGAVLQSSDR 1322



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 402 LTAGAELSLPCEVDGYPQPENVYWSKD 482
           + AG  L + C V GYP  E++ W +D
Sbjct: 502 IVAGETLRVTCPVAGYP-IESIVWERD 527



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 411 GAELSLPCEVDGYPQPENVYWSK 479
           G++  + C+ DG+P+P+ V W K
Sbjct: 693 GSDARVECKADGFPKPQ-VTWKK 714



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 76  RENVLLIRQLIDEALGEYACQAYNGEGS 159
           R ++L+I  +     GEY C A N  G+
Sbjct: 639 RVSMLMISVITARHAGEYVCTAENAAGT 666


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 354 LFTAPVSTRILSAPPTLTA--GAELSLPCEVDGYPQ--PENVYWSKDG 485
           + TAP+   +   PP L+   G      CEV  +PQ  P  + W KDG
Sbjct: 326 IVTAPLHVEV--TPPLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDG 371



 Score = 29.1 bits (62), Expect = 0.033
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 399 TLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDKY 512
           TL  G  +SL C   G P P+ V W+ DG  + +  ++
Sbjct: 432 TLQPGPAVSLKCSAAGNPTPQ-VTWALDGFALPTNGRF 468



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 1    PTPEIFWYRGLNGPMVPYSST--LYEARENVLLIRQLIDEALGEYACQAYNGEGS 159
            PT E  WY+G  G  +   ST  +       L++  L  +  G+Y CQ  N +G+
Sbjct: 1341 PTRE--WYKG-QGEQIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGN 1392



 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 399 TLTAGAELSLPCEVDGYPQPENVYWSK 479
           T  AG  L L C V GYP  E + W +
Sbjct: 529 TAVAGETLRLKCPVAGYP-IEEIKWER 554


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 354 LFTAPVSTRILSAPPTLTA--GAELSLPCEVDGYPQ--PENVYWSKDG 485
           + TAP+   +   PP L+   G      CEV  +PQ  P  + W KDG
Sbjct: 326 IVTAPLHVEV--TPPLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDG 371



 Score = 29.1 bits (62), Expect = 0.033
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 399 TLTAGAELSLPCEVDGYPQPENVYWSKDGVRIASGDKY 512
           TL  G  +SL C   G P P+ V W+ DG  + +  ++
Sbjct: 432 TLQPGPAVSLKCSAAGNPTPQ-VTWALDGFALPTNGRF 468



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 1    PTPEIFWYRGLNGPMVPYSST--LYEARENVLLIRQLIDEALGEYACQAYNGEGS 159
            PT E  WY+G  G  +   ST  +       L++  L  +  G+Y CQ  N +G+
Sbjct: 1337 PTRE--WYKG-QGEQIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGN 1388



 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 399 TLTAGAELSLPCEVDGYPQPENVYWSK 479
           T  AG  L L C V GYP  E + W +
Sbjct: 529 TAVAGETLRLKCPVAGYP-IEEIKWER 554



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 387 SAPPTLTAGAELSLPCEVDGYPQPENVYWSKDG 485
           +A   L  G   +L C V     P ++ W KDG
Sbjct: 617 TADRDLHLGERTTLTCSVTRGDLPLSISWLKDG 649



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 37  GPMVPYSSTLYEARENVLLIRQLIDEALGEYACQAYN 147
           GP      T  +   ++L+I  L  +  G Y+C A N
Sbjct: 653 GPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCVARN 689


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 341 FQRSPVYRAGVDKDIVGAPDADRGRRTESALR 436
           FQR P YRA V K I       +G   E A R
Sbjct: 98  FQRIPAYRAEVQKAISECKGIAKGDNCEYAYR 129


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 411 PRSASGAPTISLSTPAR*TG 352
           P S  G P++SLS+P R  G
Sbjct: 124 PESRDGPPSVSLSSPPREPG 143


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 481 SLDQYTFSGCGYP 443
           SL+++ F GCG+P
Sbjct: 572 SLERFDFCGCGWP 584


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 266 HYPHWTPSPGRDTRYLLSEGVSSCLYARTS 177
           H PH+T  P  D   LL  G +  L A  S
Sbjct: 251 HIPHFTSLPLEDQVLLLRAGWNELLIASFS 280


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 266 HYPHWTPSPGRDTRYLLSEGVSSCLYARTS 177
           H PH+T  P  D   LL  G +  L A  S
Sbjct: 251 HIPHFTSLPLEDQVLLLRAGWNELLIASFS 280


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 43  MVPYSSTLYEARENVLLIRQLIDEALGEYACQAYNGEG 156
           M P+   ++  R   LL+ ++ D+ L + A    +G G
Sbjct: 332 MAPWVRKIFIRRLPKLLLMRVPDDLLNDLAAHKMHGRG 369


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +2

Query: 296 HRHYHCCPHH 325
           H H H  PHH
Sbjct: 423 HSHIHATPHH 432


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 529 TSSTYPYLSPDAILTPSLDQYTFSGCGYPSTS 434
           TSS YPY+S  A       Q   +   + +TS
Sbjct: 85  TSSMYPYVSAAAAHHHHQQQQAVAAAAFGATS 116


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 450 PQPENVYWSKDGVRIASGDKY 512
           P   N Y +KDG RI     +
Sbjct: 10  PASANYYENKDGARIVKASHF 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,692
Number of Sequences: 438
Number of extensions: 3087
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)