Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00496
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    77   3e-15
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    54   2e-08
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   4.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.8  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   4.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   6.3  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
 Frame = +1

Query: 7   ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 180
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 181 AELNYAMDVYELNRRVNSSESIVG 252
            E+ Y   +Y L+ + N  E +VG
Sbjct: 81  VEMEYHRAMYHLHLKANPREVVVG 104


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
 Frame = +1

Query: 13  VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 183
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 184 -ELNYAMDVYELNRRVNSSESIVG 252
            + N+   + E+ +++N++E +VG
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVG 100


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 55  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 180
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 157 KEHADQVEAELNYAMD--VYELNRRVNSSESIVGCGRLAMK*PTTPLLYTSITPVNA 321
           +E AD   A +  A+D  ++E   RV ++ S++ CG   +   TTP    S+  +NA
Sbjct: 385 RESADDF-ANITKAVDPSLFESCIRVQNAPSLIKCGVCLIISSTTPSFCASVNLLNA 440


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 428 HVHSCRCHSHV 460
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 3    QY*CKGPSCCFISNCGRIRTSKCRF 77
            Q+  K P C  IS   R   SKCR+
Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRY 1979


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 1   LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 165
           LNI ++   +V+ ++++  ++RN D H  I       +  TSD  ++ + N F +    H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312

Query: 166 AD 171
            D
Sbjct: 313 RD 314


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 66  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 209
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,608
Number of Sequences: 5004
Number of extensions: 50406
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)