Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00496
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    71   7e-13
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    59   4e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    43   3e-04
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    29   5.0  
11_01_0433 - 3323372-3324616,3324708-3324905                           28   6.6  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    28   8.7  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    28   8.7  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +1

Query: 10  SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 186
           S +V  VV+F I D+Y RR   + RVIGTLLG+    G V V N + VPH E  DQV  +
Sbjct: 18  SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77

Query: 187 LNYAMDVYELNRRVNSSESIVG 252
           + Y  ++Y  + +VN  E IVG
Sbjct: 78  IEYHHNMYASHHKVNPKEVIVG 99



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/84 (29%), Positives = 46/84 (54%)
 Frame = +3

Query: 255 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMF 434
           ++TG  V+  S++IH++YSRE + P+H+T+DT    G   ++AY+   L + +      F
Sbjct: 101 FSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQF 160

Query: 435 TPVDVTLTCYEPEIVGLQVCQKTV 506
             + + L   E   VG  + + T+
Sbjct: 161 QEIPLDLRMLEAGKVGFDILKSTI 184


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
 Frame = +1

Query: 13  VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 180
           V VHP+VL  IVD Y R   D+  RV+G LLGTS +G V+VTN + VP +E         
Sbjct: 17  VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76

Query: 181 AELNYAMDVYELNRRVNS 234
            + NY   ++ + +R+N+
Sbjct: 77  LDHNYHESMFSMFKRINA 94


>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVG 252
           V G LLG     V+EVTNCF  P +E  ++ +A+  NY +++    R VN   + VG
Sbjct: 57  VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVG 113


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 424 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 326
           P  PF +P  +  +AR P  P  +E+S    TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631


>11_01_0433 - 3323372-3324616,3324708-3324905
          Length = 480

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 228 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 133
           D++V L+ IH+ I F F    ++FVW  +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 228 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 133
           D++V L+ IH+ I F F    ++FVW  +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 104 ARATKEWWK*PTASACHTKN-MPIKSK 181
           A  +KEWW     +ACH  N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,328
Number of Sequences: 37544
Number of extensions: 352697
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)