Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00493X
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    31   0.18 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.1  

>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 210 LQEASLKFSRISQTHLNCV-LVSINNISVHYSIAYDNINSVHLLLLKHPPSGDIFTCEY 383
           +++AS +++ +    L  + L+ + N  V  S++++ I  VHL L + PPS   FT EY
Sbjct: 49  IRDASSEWNELRFKKLRLLTLIDLANRHVGSSVSFETI-LVHLQLDRLPPSDPTFTVEY 106


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 166 SLIIELKKHYIKLQFYKRLRSSFRGF 243
           S  +EL KH  K  FYK LRSS   F
Sbjct: 828 STSVELTKHMGKSFFYKILRSSLASF 853


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 393 FISIKYNSVYSLNVRLILIAQQLIFHIKIKYHWQYV 500
           F+S  Y+ ++      I +A QL +HI  K +  YV
Sbjct: 444 FVSQSYDDLFPYMDNFIQLAVQLFYHISKKVNCLYV 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,892
Number of Sequences: 5004
Number of extensions: 45131
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)