Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00493X
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           27   9.3  
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)          27   9.3  
SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 442  ISLTFREY-TELYLIEINPYLYSQVKISPEGGCFNSKRCTELILSYAIE 299
            IS  F E   E  + + N  ++S VK      C N  +CTE+I  +  E
Sbjct: 2558 ISRNFSELPNENVISKANQTVWSVVKPCESNPCMNEAKCTEMIRDFQCE 2606


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = +3

Query: 228  KFSRISQTHLNCVLVSINNISVHYSIAYDNINSVHLLLLKH 350
            +++  + +H  C  +    ++  Y+I YD ++ VH     H
Sbjct: 969  RYTMFTHSHTACYTMHYYTLTTRYTIQYDTVHHVHASYNSH 1009


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 306 AYDNINSVHLLLLKHPPSGDIFTCEYK*GFISIKY 410
           A DN   + L+  +    GD+ T EY+ GF ++ Y
Sbjct: 108 ANDNQEEMRLMAAEDRLYGDLITSEYREGFFNMSY 142


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 306 AYDNINSVHLLLLKHPPSGDIFTCEYK*GFISIKY 410
           A DN   + L+  +    GD+ T EY+ GF ++ Y
Sbjct: 104 ANDNQEEMRLMAAEDRLYGDLITSEYREGFFNMSY 138


>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 306 AYDNINSVHLLLLKHPPSGDIFTCEYK*GFISIKY 410
           A DN   + L+  +    GD+ T EY+ GF ++ Y
Sbjct: 179 ANDNQEEMRLMAAEDRLYGDLITSEYREGFFNMSY 213


>SB_34298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 398 NKSLFIFTSKNITRRW 351
           N+SLFIF+ KNI RR+
Sbjct: 49  NRSLFIFSEKNIIRRF 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,189
Number of Sequences: 59808
Number of extensions: 307457
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)