Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00491
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 108 6e-25
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 107 8e-25
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 1.8
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 4.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.2
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.2
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 9.5
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 108 bits (259), Expect = 6e-25
Identities = 49/78 (62%), Positives = 65/78 (83%)
Frame = +1
Query: 13 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 192
ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 193 AWRHFYWYLTNEGIEYLR 246
W FY+ LTNEG+EYLR
Sbjct: 60 NWGWFYYTLTNEGVEYLR 77
Score = 49.2 bits (112), Expect = 4e-07
Identities = 33/80 (41%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 LENILHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 419
L LHLP E+VPAT KR VR R GRP+ RS+ + YRR +K
Sbjct: 76 LREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---------EK 123
Query: 420 KAD-VGPGSADLEFKGGYGR 476
K D PG F+GG+GR
Sbjct: 124 KDDGAAPGGFAPSFRGGFGR 143
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 107 bits (258), Expect = 8e-25
Identities = 49/78 (62%), Positives = 64/78 (82%)
Frame = +1
Query: 13 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 192
ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 193 AWRHFYWYLTNEGIEYLR 246
W FY+ LTNEG+EYLR
Sbjct: 60 NWGWFYYTLTNEGVEYLR 77
Score = 44.4 bits (100), Expect = 1e-05
Identities = 30/79 (37%), Positives = 37/79 (46%)
Frame = +3
Query: 240 LENILHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 419
L LHLP E+VPAT KR VR R GRP+ R++ D + YRR K
Sbjct: 76 LREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA--------EKK 123
Query: 420 KADVGPGSADLEFKGGYGR 476
P F+GG+GR
Sbjct: 124 DEGAAPSGFAPSFRGGFGR 142
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 214 YLTNEGIEYLRIFFTFLLKLCLQHLS 291
Y++N+GI LR F L KL L HLS
Sbjct: 349 YMSNKGIISLRDEFLVLSKLDLMHLS 374
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 370 DLSSAERAGASGRPTGPRRT 311
DLSSAER A GRP + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 95 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 187
+H + L+ RFL + L ++C H+ +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 336 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 449
P+A S+ +Y + A+ P +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 264 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 371
P I P ++ V TVR G PD P+ S R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 97 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFFTFLLKLC 276
AP++T+ + N ++ K + KS + + +W+ T G+EY++ F L
Sbjct: 37 APRYTK-SYMHNAEIYKCFPT-KSNYILSVSYDGYVKFWHKTPNGVEYIKEFHAHNAMLL 94
Query: 277 LQHLS 291
LS
Sbjct: 95 SAELS 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,423
Number of Sequences: 5004
Number of extensions: 37945
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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