Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00491
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 139 2e-33
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 33 0.20
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 1.0
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 1.8
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 5.6
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 139 bits (336), Expect = 2e-33
Identities = 59/80 (73%), Positives = 72/80 (90%)
Frame = +1
Query: 13 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 192
ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1 MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60
Query: 193 AWRHFYWYLTNEGIEYLRIF 252
W+H+YW LTNEGI YLR F
Sbjct: 61 CWKHYYWNLTNEGITYLRDF 80
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/84 (47%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 240 LENILHLPPEIVPATLKRSV-RTETVRRGPVGR--PDAPARSAE-DRSAYRRTPAAPGVA 407
L + LHLP EIVPATL+R V R ET R P G P P + DR +YRR P PGV
Sbjct: 77 LRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGDRDRESYRRGP-PPGV- 134
Query: 408 PHDKKADVGPGSADLEFKGGYGRG 479
+ K G G EF+ G+GRG
Sbjct: 135 --EGKGGAGSGFKP-EFRQGFGRG 155
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 32.7 bits (71), Expect = 0.20
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 109 TELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFFTFLLKLCLQHL 288
T LE+ + M + KS G K++ R YL +EG Y R F+T LLK+ +
Sbjct: 2066 TALERFHKDVNVAMMITGKSTGGDKKEMDMRP---YLYDEGDSYERPFYTTLLKMLYEVA 2122
Query: 289 SAQYVQRQY 315
++ + ++QY
Sbjct: 2123 TSTFYEKQY 2131
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 381 RTPAAPGVAPHDK-KADVGPGS 443
+TPA PG+AP D K VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 390 AAPGVAPHDKKADVGP 437
A PG+APHDKK+ GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 318 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 437
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +3
Query: 255 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 401
HL P ++ + S+ RGP GRP P R + R P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 318 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 437
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 37 VAIYEYLFKEGVMVAKKDYHAPKHTELEKIPN 132
+A +++L K + + APK +EK+PN
Sbjct: 1395 IADFDFLSKSAIQALRLPVPAPKVNNMEKVPN 1426
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 330 GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 443
G P+ + S+E R RT AP P K PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 211 WYLTNEGIEYLRIFFTFLLKLCLQHLSAQYVQRQYAVALLVV 336
WY + EY R+ +L + CL+++ + + R++ V + V
Sbjct: 463 WYSSPYPEEYQRLKKIYLCEFCLKYMKSPTILRRHMVVTVTV 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,428
Number of Sequences: 59808
Number of extensions: 291830
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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