Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00490
         (837 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E48005 Cluster: PREDICTED: hypothetical protein;...    43   0.011
UniRef50_UPI0000E49AC5 Cluster: PREDICTED: similar to Cut5-relat...    39   0.18 
UniRef50_UPI00015B4AA8 Cluster: PREDICTED: similar to ENSANGP000...    36   1.3  
UniRef50_Q6UB88 Cluster: Res3; n=3; Staphylococcus|Rep: Res3 - S...    36   1.3  
UniRef50_Q4J7J5 Cluster: Conserved protein; n=1; Sulfolobus acid...    35   2.2  
UniRef50_A6PIY8 Cluster: DNA internalization-related competence ...    34   3.8  
UniRef50_UPI0000E4A1F8 Cluster: PREDICTED: hypothetical protein,...    33   6.7  
UniRef50_Q0RBW4 Cluster: Putative tetR family transcriptional re...    33   8.9  
UniRef50_A0UX39 Cluster: Polysaccharide deacetylase; n=3; Bacter...    33   8.9  

>UniRef50_UPI0000E48005 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 880

 Score = 42.7 bits (96), Expect = 0.011
 Identities = 25/77 (32%), Positives = 43/77 (55%)
 Frame = +2

Query: 272 GYPLDSYDLRMIIKRYIDRIGIKINRFTNNLPGVNYIENFLKRHHQEISPRISQNIKRCR 451
           GY     DL+  +K+ +D  G +   F +NLPG  +++ F  R H E+  R  Q + + R
Sbjct: 295 GYGQTLSDLKQTVKKILDDDG-RPTPFKDNLPGKKWMKEFQHR-HPELVMRTPQLLGKER 352

Query: 452 AALSPQIIEDYFIQLQN 502
           A LS ++I  ++ QL++
Sbjct: 353 AVLSVEVISRWYNQLED 369


>UniRef50_UPI0000E49AC5 Cluster: PREDICTED: similar to Cut5-related
           protein, partial; n=2; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to Cut5-related
           protein, partial - Strongylocentrotus purpuratus
          Length = 691

 Score = 38.7 bits (86), Expect = 0.18
 Identities = 24/68 (35%), Positives = 35/68 (51%)
 Frame = +2

Query: 272 GYPLDSYDLRMIIKRYIDRIGIKINRFTNNLPGVNYIENFLKRHHQEISPRISQNIKRCR 451
           GY     DLR  +K+ +D  G +   F  NLPG  ++  F  R H E+  R  Q + + R
Sbjct: 453 GYGQTQRDLRQTVKKILDDDG-RDTPFKENLPGKTWMRKFQNR-HPELVMRTPQLLGKER 510

Query: 452 AALSPQII 475
           A LS ++I
Sbjct: 511 AVLSIELI 518


>UniRef50_UPI00015B4AA8 Cluster: PREDICTED: similar to
           ENSANGP00000028549; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000028549 - Nasonia
           vitripennis
          Length = 385

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +2

Query: 281 LDSYDLRMIIKRYIDRIGIKIN-RFTNNLPGVNYIENFLKRHHQEISPRISQNIKRCRA- 454
           L SYD+R +   + +++ I  N   T  L G +++ NFLKRH  ++S R +++    RA 
Sbjct: 72  LTSYDVRKLAFDFAEKLRIPHNFNRTEGLAGKDWVHNFLKRH--DLSFRKAEHTSAARAH 129

Query: 455 ALSPQIIEDYFIQLQ 499
             + + +++++  L+
Sbjct: 130 GFNQEAVKEFYTLLK 144


>UniRef50_Q6UB88 Cluster: Res3; n=3; Staphylococcus|Rep: Res3 -
           Staphylococcus aureus
          Length = 180

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 63  KYDPLILKTAIEAYEIEKKSLVEIAKQFNISKSVLHRHVTR 185
           K D   L+ AIE Y  +K +L EI +Q NIS++ L+RH+ +
Sbjct: 140 KRDDKNLRDAIEMYMSKKYTLDEIKEQTNISRATLYRHLDK 180


>UniRef50_Q4J7J5 Cluster: Conserved protein; n=1; Sulfolobus
           acidocaldarius|Rep: Conserved protein - Sulfolobus
           acidocaldarius
          Length = 113

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +2

Query: 191 EMSRWTKMSK*RSRKIHNKIYYVCSEWGYPLDSYDLRM---IIKRY-IDRIGIKINRFTN 358
           E+S WT   K RS K+   IYY    +G  +  + L++   +I+R     I   + RF+ 
Sbjct: 37  ELSHWTYFKKFRSSKLEKPIYYALIVFGLLVSIFGLKVTKAVIRRLEAGAINFYLERFSG 96

Query: 359 NLPGVNYIENFLKRHHQEI 415
           +      IEN  +R H EI
Sbjct: 97  DKDVEWIIEN--EREHMEI 113


>UniRef50_A6PIY8 Cluster: DNA internalization-related competence
           protein ComEC/Rec2 precursor; n=2; Shewanella|Rep: DNA
           internalization-related competence protein ComEC/Rec2
           precursor - Shewanella sediminis HAW-EB3
          Length = 783

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = +3

Query: 36  VSKSAKPYKKYDPLILKTAIEAYEIEKKSLVEIAKQ--FNISKSVLHRHVTRRMKCQGGQ 209
           +SK+ +   K  P I    I  +EI+ K +  +  Q  +N  K++L RH+  +   QGG+
Sbjct: 121 LSKNLRISWKKAPKIQLGEIWEFEIKAKPITSVLNQGGYNQQKALLSRHIVGKGSVQGGR 180

Query: 210 R-CLSEEAEKYIIKYIM----FVQSGGIHLILM 293
           R  +S      II  +M     ++SG + L L+
Sbjct: 181 RLSVSHSVRAKIITELMPHLRLLESGDLILALL 213


>UniRef50_UPI0000E4A1F8 Cluster: PREDICTED: hypothetical protein,
           partial; n=2; Strongylocentrotus purpuratus|Rep:
           PREDICTED: hypothetical protein, partial -
           Strongylocentrotus purpuratus
          Length = 807

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +2

Query: 293 DLRMIIKRYIDRIGIKINRFTNNLPGVNYIENFLKRHHQEISPRISQNIKRCRAALSPQI 472
           D++ ++K  +D+   + + F NN PG  +   F+KR H  +  R  Q   + R  +S + 
Sbjct: 666 DIQNVVKTLLDKDS-REHPFVNNTPGRRWWRGFVKR-HPNLKHRKHQLTDKKRVMVSEER 723

Query: 473 IEDYFIQLQ 499
           IE +F + +
Sbjct: 724 IETWFKEFE 732


>UniRef50_Q0RBW4 Cluster: Putative tetR family transcriptional
           regulatory protein; n=1; Frankia alni ACN14a|Rep:
           Putative tetR family transcriptional regulatory protein
           - Frankia alni (strain ACN14a)
          Length = 233

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 78  ILKTAIEAYEIE--KKSLVEIAKQFNISKSVLHRHVTRRMKCQGGQRCLSEEAEKY 239
           IL TA   +  +  + SL EIA++ N+  + L+RH   R  CQ     LSE+ EKY
Sbjct: 65  ILATARRVFAEQGVQASLDEIAQRANVGNATLYRHFGSR--CQLVAAALSEQMEKY 118


>UniRef50_A0UX39 Cluster: Polysaccharide deacetylase; n=3;
           Bacteria|Rep: Polysaccharide deacetylase - Clostridium
           cellulolyticum H10
          Length = 266

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 230 RKIHNKIYYVCSEWGYPLDSYDLRMIIKRYIDRIGIKINRFTNNLPGVNYIENFLKRH 403
           R++ N + Y      YP   YD  ++  + +D +GI+ +R  N+  G +   NFL+ H
Sbjct: 96  RELENIVGYPLRGMSYPFGEYDADVV--KALDVLGIEYSRTVNSTGGFSMPGNFLEWH 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,022,097
Number of Sequences: 1657284
Number of extensions: 14633753
Number of successful extensions: 36645
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36635
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)