Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00490
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   4.4  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   5.8  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   5.8  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 356 NNLPGVNYIENFLKRHHQEISPRISQ 433
           ++L G N+IEN LK H Q  S  I++
Sbjct: 353 SDLSGENWIENILKHHDQLFSVEITR 378


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 72  PLILKTAIEAYEIEKKSLVEIAKQFNISKSVLHRHVTRRMKCQGGQRCLSEEAE 233
           P I  ++  + E EKK L ++ KQ+N + + L+     + K +  ++ L E+ E
Sbjct: 705 PRIGFSSSTSIEAEKKILDDLKKQYNFASNQLNEAKIEQAKFKRDEQLLVEKIE 758


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 834 IVEVWKSHGSTQSSNVLPPN 775
           + E WKSHG    S +L PN
Sbjct: 182 LYEAWKSHGLLDWSKLLEPN 201


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 632 LCVVHNLSGYLTPLLIKTFFFSGSSAKLDSS*LTMLSKGTPILNFEAV 489
           +C+   ++ YL P     FFF  +S K+ SS +       P+ N + V
Sbjct: 142 ICIKDFVTSYLVPYDDVRFFFYKNSKKVISSLIESSKTDDPMANLDIV 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,251
Number of Sequences: 5004
Number of extensions: 64919
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)