Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00490
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    29   3.1  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    29   3.1  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    29   3.1  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical
           protein F58G11.6 protein.
          Length = 528

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 371 VNYIENFLKRHHQEISPRISQN 436
           VN+ ENFL    +EIS RIS+N
Sbjct: 76  VNFTENFLSTSRREISERISEN 97


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 277 IPPL*TNIIYFIMYFSASSLRHLCPP*HFILLVTCLCK 164
           + PL T    F++ FSA+ +  LC    FI+ V CLCK
Sbjct: 223 LDPLTTVSGVFVLLFSATIILSLCG---FIMFVCCLCK 257


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 277 IPPL*TNIIYFIMYFSASSLRHLCPP*HFILLVTCLCK 164
           + PL T    F++ FSA+ +  LC    FI+ V CLCK
Sbjct: 229 LDPLTTVSGVFVLLFSATIILSLCG---FIMFVCCLCK 263


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 277 IPPL*TNIIYFIMYFSASSLRHLCPP*HFILLVTCLCK 164
           + PL T    F++ FSA+ +  LC    FI+ V CLCK
Sbjct: 229 LDPLTTVSGVFVLLFSATIILSLCG---FIMFVCCLCK 263


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 211 LCPP*HFILLVTCLCKTDLLILNCLAIST 125
           + PP  FI+L+ C+  +  L++ C  IST
Sbjct: 5   IVPPTRFIILIACILASIQLLVQCSPIST 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,067,176
Number of Sequences: 27780
Number of extensions: 360999
Number of successful extensions: 952
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)