Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00490
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.65 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.1  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 508 MGVPLDNIVNYDESNLADDPEKKKVLI 588
           MG PL+NI+   + +    PEK K+ +
Sbjct: 514 MGTPLENILESCQQDETHAPEKTKIFL 540


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 815 ATVPPNPQTYCRQTS 771
           AT PP PQT  + TS
Sbjct: 247 ATKPPKPQTKTKPTS 261


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 236 IHNKIYYVCSEWGYP 280
           + N+ +Y+C E  YP
Sbjct: 210 VRNEAFYICCEEPYP 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 651 LAASADGSLLPCYVVYKAEHL 713
           L  +   SLLP +V YK +H+
Sbjct: 393 LEDAPQNSLLPNFVGYKGKHI 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,832
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)