Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00489
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    27   0.22 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.29 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.29 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.88 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.7  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.2  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 506 TSTWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGM 613
           +S W I    +P   +   FL +GRS T + +PFG+
Sbjct: 398 SSYWQIPL--SPESRQYTAFLYNGRSYTYQVLPFGL 431


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 105 DGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 203
           DGH++  TF  +E   + DV++ + L+  F+ V
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLAVLIVGFRLV 656


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 105 DGHLLTRTFLVTERITLADVIVFSTLLHAFQHV 203
           DGH++  TF  +E   + DV++ + L+  F+ V
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLAVLIVGFRLV 656


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 660 TAHEHLSEFLRVF--VFGIPNGIVLGVKLLPEVRNRFSFVFV 541
           T H HLS+ +R+F  +FG    ++ G+  L   +  F+   V
Sbjct: 856 TLHHHLSKLIRLFNEIFGHGLLLMFGISFLLVTQTIFALCVV 897


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 336 FLGSYVGGAAQSVSEPTTADTCGWW 262
           F+ S  GG   S+ +  T   CG W
Sbjct: 208 FVLSRAGGLVNSLYQNATRKVCGVW 232


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 97  KYWTDIFSHAPSLLPRESHLPMSLS-SVHCC 186
           K + D+F+ +  L+PR    P+S S   H C
Sbjct: 182 KVFVDLFNLSTFLIPRSYIPPLSTSMRSHLC 212


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 97  KYWTDIFSHAPSLLPRESHLPMSLS-SVHCC 186
           K + D+F+ +  L+PR    P+S S   H C
Sbjct: 342 KVFVDLFNLSTFLIPRSYIPPLSTSMRSHLC 372


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 97  KYWTDIFSHAPSLLPRESHLPMSLS-SVHCC 186
           K + D+F+ +  L+PR    P+S S   H C
Sbjct: 342 KVFVDLFNLSTFLIPRSYIPPLSTSMRSHLC 372


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,909
Number of Sequences: 336
Number of extensions: 3839
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)