Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00489
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 96 6e-21
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 42 7e-05
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 29 0.74
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.3
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 27 2.2
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 3.0
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 26 5.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 5.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 5.2
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 95.9 bits (228), Expect = 6e-21
Identities = 42/86 (48%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +1
Query: 511 NMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQ 684
+++++KRVYSN+D + ++P+F+E FDPENYS+W +Y YPE+L + VFM+ NLI G FQ
Sbjct: 264 DIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQ 323
Query: 685 RLDKMRKQAFASVCLFGEDNNSTISG 762
RL+ RK F + GE+ ++TI+G
Sbjct: 324 RLEASRKYIFGCCVVIGENGDNTITG 349
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +3
Query: 45 FNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRS 224
+++Q + A++ + D L ++T+LV R+TLAD+ L +VL S +
Sbjct: 121 YDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLA 180
Query: 225 SLINVQRWF 251
++ R++
Sbjct: 181 KYTHIYRYY 189
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/80 (26%), Positives = 44/80 (55%)
Frame = +3
Query: 15 WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAF 194
WV + G + + ++ + + + + +LK+ + + RT+LV +R TLAD+ S L F
Sbjct: 116 WVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFF 175
Query: 195 QHVLDPSVRSSLINVQRWFL 254
++D R L ++ R+++
Sbjct: 176 NSIIDEKTRKELPHLTRYYI 195
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 29.1 bits (62), Expect = 0.74
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 572 SGRSLTPRTIPFGMPNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 730
SGR + R + + PN L+ R VTL VC RG + +NR+ C
Sbjct: 163 SGRKIQ-RPVAYN-PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 79 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 171
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 767 PHPEMVELLSSPNRQTDAKACLRILSNL 684
PHPE+ + + +A AC++ LSNL
Sbjct: 113 PHPELEATVFQQEARIEALACMKRLSNL 140
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 488 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 381
RRGPWTP ++ + +L +++ L +H L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -3
Query: 770 HPH-PEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 660
+PH P V+ L+ PN + CL IL WN PV+ L
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 491 SMPKGTSTWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMPNTN 625
S P +ST+ S+V LN + G+ + TIP G P+T+
Sbjct: 204 SQPVPSSTFSRSAVVPNPSLPLNPSVLQGQVMNNPTIPKGTPSTS 248
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 518 MISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 649
+++ +TP + +L SGRSL T G+ N +T + C
Sbjct: 843 LVTDTTTPYLSDFSLVNESGRSLLHLTAACGLSNASTFLCNAGC 886
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,598
Number of Sequences: 5004
Number of extensions: 62071
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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