Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00489
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 72 4e-13
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 58 6e-09
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 42 5e-04
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 40 0.003
02_05_1202 + 34932291-34933027,34933297-34933774 35 0.063
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 31 1.3
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 5.4
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 29 5.4
03_03_0142 + 14800317-14801240 29 5.4
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 7.2
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 9.5
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +1
Query: 475 QGPLRLDA*RYLNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK 645
+ PL L + +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 264 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 323
Query: 646 VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 762
F++ N + G QR+D RK AF + + G + + G
Sbjct: 324 SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKG 362
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +1
Query: 475 QGPLRLDA*RYLNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK 645
+ PL L + +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 829 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 888
Query: 646 VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 762
F++ N + G QR+D RK AF + + G + + G
Sbjct: 889 SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKG 927
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = +3
Query: 15 WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAF 194
W++P LGI + + E A + L +L L+ HL + T+LV +TLAD+++ L F
Sbjct: 121 WLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGF 180
Query: 195 QHVLDPSVRSSLINVQRWF 251
++ S S +V+R+F
Sbjct: 181 ARIMTKSFTSEFPHVERYF 199
Score = 51.6 bits (118), Expect = 7e-07
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +3
Query: 15 WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAF 194
W+FP LG + + E A + L +L L+ HL + T+LV +TLAD+++ L F
Sbjct: 682 WLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGF 741
Query: 195 QHVLDPSVRSSLINVQRWF 251
++ + S +V+R+F
Sbjct: 742 ARIMTKNFTSEFPHVERYF 760
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 58.4 bits (135), Expect = 6e-09
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +1
Query: 475 QGPLRLDA*RYLNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK 645
+ PL L + +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 281 KNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTV 340
Query: 646 VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 762
F++ N +R+D RK AF + + G + G
Sbjct: 341 SFVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKG 373
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +3
Query: 15 WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAF 194
W++P LG + E A + L +L L+ HL + T+LV +TLAD+++ L + F
Sbjct: 136 WLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGF 195
Query: 195 QHVLDPSVRSSLINVQRWF 251
+L S S +V+R+F
Sbjct: 196 VRILIKSFTSEFPHVERYF 214
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 75 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 251
S+ AA LDG+L +RTFLV+ +++AD++V+S L Q N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWF 151
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 75 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 251
S+ A +DG+L++RTFLV +T+AD+ V+S L Q N+ RWF
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 35.1 bits (77), Expect = 0.063
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 48 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLL 185
+++ + A +L AAL L+ HL +L + +TLADV +F+TL+
Sbjct: 252 SQEAYDAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLV 297
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 63 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAF-QHV 203
E AK++LL L+ L+G L R+F + D+++ FS++ H + QH+
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYKQHM 159
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 118 SHAPSLLPRESHLPMSLSS 174
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -3
Query: 497 ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 339
A ++GPWTP QE P +W A+ +T + C SC + + L PG
Sbjct: 10 AEVKKGPWTPEEDLMLVAYVQEH-GPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPG 64
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 488 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 339
++GPWTP QE P +W A+ T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDMVLASYVQEH-GPGNWRAVPPRTGLLRCSKSCRLRWTNYLRPG 64
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 527 SVSTPTKTK-LNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 649
S+ P + K L + + S +PF MPN TL S RC
Sbjct: 291 SIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRC 332
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 707 RLSHPSACLVKTTIPPSPDVG 769
R HP++ LV+ T PP P G
Sbjct: 30 RAGHPTSALVRATAPPPPATG 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,717,664
Number of Sequences: 37544
Number of extensions: 472462
Number of successful extensions: 1446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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