Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00489
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                 118   4e-27
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 60   2e-09
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   3.1  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        29   5.5  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   7.3  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   9.6  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    28   9.6  
SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)                28   9.6  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score =  118 bits (285), Expect = 4e-27
 Identities = 50/88 (56%), Positives = 70/88 (79%), Gaps = 3/88 (3%)
 Frame = +1

Query: 508 LNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYK--YPEELAKVFMSCNLITGM 678
           +N+D +K+VYSNED E+K+IPYFWE FD E YS+W+ EYK  Y ++L  VFM+CNL+ GM
Sbjct: 3   MNLDAWKKVYSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGGM 62

Query: 679 FQRLDKMRKQAFASVCLFGEDNNSTISG 762
            QRL+K+ K  F S+C+FGE++N +I+G
Sbjct: 63  IQRLEKLVKNGFGSICIFGENHNCSIAG 90


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +3

Query: 3   ASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 182
           A+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 86  AAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 18  VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 161
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 54  QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSS 227
           ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T +      L    R  
Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATSIAVILTSLGDEDRKP 170

Query: 228 LINVQRWF 251
             N+  W+
Sbjct: 171 YQNIVSWY 178


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = +2

Query: 113  SSHTHLPC--YRENHTCRCHCLQYTAACFPARARPERPFVADKRSALVP-AVAHQP 271
            S +T  PC  Y+   TC C C+ YT   FP       P    K     P A  H P
Sbjct: 873  SHYTPFPCPHYQGGPTCECQCMGYTP--FPCPHYQGGPACECKSMGYTPFACPHYP 926


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 122  THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 253
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 36  IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 170
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 333  LGSYVGGAAQSVSEPTTADTCGWWATAGTNA-ERLSATNGR 214
            +G    G      EPTT+D   +++T G NA + LSAT G+
Sbjct: 1257 IGWTTNGQGDLAFEPTTSDPEFFYSTPGINAGDLLSATAGQ 1297


>SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)
          Length = 366

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 586 DPENYS----IWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFA 717
           DP+NY+    +W  E +Y   + + F S +L     Q +D    +AFA
Sbjct: 248 DPDNYNPDQVVWRVELRYHHSIIQQFASGSLDVRTGQAIDTRSFEAFA 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,282,247
Number of Sequences: 59808
Number of extensions: 529625
Number of successful extensions: 1486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)