Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00487
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 28 1.6
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 2.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 3.7
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 4.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.5
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 8.6
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 8.6
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.6
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 8.6
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 282 EVYHSKDDSISTKFNRICCWSYFKSLSRKKCRFTGRRQ 169
E +HS+ S K R S+F SL+RK+ +F G Q
Sbjct: 509 ERFHSRSVDASPKAVRRESRSFFPSLTRKRSKFFGSSQ 546
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 118 LKKSACVCEFSNGTGIDLSSASKSTFFSAQTFEVAPATNAIELSTYTII 264
+KK+ FSN +D S S T S QT + P+++ E II
Sbjct: 959 IKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVII 1007
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 363 VDGTPDTYKKDLNVYDLIGNTDKSVFSAKGDAVVYTHGPSNTT 491
+D TP+ VY++ GN K S+KG +Y N T
Sbjct: 293 MDVTPNDGSAQFVVYNMSGNPKKQTTSSKGPTRLYEVARFNCT 335
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 345 REVLHAVDGTPDTYKKDLNVYDLIGNTDKSVFSAKGDAVVYTH 473
R+V G P+T+ DLN+ G + + SA G A+ H
Sbjct: 97 RQVGSKTPGHPETHNPDLNIETGAGPLGQGIASAVGLAIGKAH 139
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 200 EKNVDLLAEDKSIPVPLENSQTHALFFRHTSS---P*IGNIEQYKQ 72
+KN+ L +K IP L +H F T+S P I ++ Y+Q
Sbjct: 296 QKNITKLNNEKRIPPQLAQPTSHVPSFIDTNSPSMPSISSVSSYQQ 341
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 699 IRNFLVQTPRTK*NMTNEKNIINKVEPTDLPES 601
++N + P+T T + NKVE TDLP S
Sbjct: 85 LQNSQLPLPKTPEKSTVHRPKANKVEVTDLPSS 117
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 626 TLLIIFFSFVIFYLVLGVCTKKFLMGATGVE 718
TL + F FV F+ + + +K +G TG++
Sbjct: 33 TLTFLQFGFVAFFSAVCLLFRKQFLGGTGIQ 63
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 276 ILLKPNSTTVNNTCTVPTAICRH 344
IL+ T+ + CTV AIC+H
Sbjct: 83 ILMMEKLKTLIHNCTVSVAICKH 105
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 118 LKKSACVCEFSNGTGIDLSSASKSTFFSAQTFEVAPATNAIELST 252
LK++ VC +G+G DL + S F T + A A+EL T
Sbjct: 1347 LKQADVVCATLSGSGHDLVAHSSLNF---STVIIDEAAQAVELDT 1388
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 318 YKYC*QL*NSVLEVYHSKDDSI 253
Y C Q+ N +EVYH KD+ +
Sbjct: 41 YYICVQVENQGIEVYHMKDERL 62
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 345 REVLHAVDGTPDTYKKDLNVYDLIGNTDKS-VFS---AKGDAVVYTHGPSNTTVLLICSC 512
R+V ++VDG D ++ +TD S +FS AK T+ P N L + SC
Sbjct: 99 RDVAYSVDGNWIAIASDETAVKVVSSTDSSQIFSLRPAKASNKHVTYSP-NGNFLAVSSC 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,482
Number of Sequences: 5004
Number of extensions: 66631
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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