Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00487
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0438 + 3110703-3111945,3112486-3113057                           30   1.7  
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    29   3.9  
06_01_0212 - 1611855-1611941,1613447-1613521,1613603-1613665,161...    28   9.0  

>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 610 KICWLDFVNNILFVCHILL-GPRSLHQEIPDGC 705
           ++CW+D     L +C +LL  PR  + ++P+GC
Sbjct: 226 EVCWIDAAYG-LVLCEVLLEDPRLRYVQLPEGC 257


>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 190 TFFSAQTFEVAPATNAIELSTYTIILAMIYF*NR 291
           TFF A+T EV  A   I +S   ++L MIYF N+
Sbjct: 66  TFFQARTPEVLVAYVIIIISPLIMMLPMIYFRNK 99


>06_01_0212 -
           1611855-1611941,1613447-1613521,1613603-1613665,
           1613745-1613810,1614133-1614202,1614513-1614683,
           1615504-1615604,1616140-1616187,1616575-1616683,
           1617092-1617248,1617372-1617521,1618262-1618380,
           1618841-1619061
          Length = 478

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 321 VPTAICRHREVLHAVDGTPDTYKKDLNVYDLIGNTDKSVFSAKGDAVVYTHGPSNTTV 494
           VP         L  +  TPD  + DL  +      DK +  +KGD  V+ +   +TTV
Sbjct: 346 VPVCTANRPRHLDNICKTPDECRDDLFKFKA-RPVDKKILGSKGDIGVFQNAKRSTTV 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,784,932
Number of Sequences: 37544
Number of extensions: 369058
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)