Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00487
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52256| Best HMM Match : Man-6-P_recep (HMM E-Value=2.4e-06)         40   0.003
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              32   0.56 
SB_31982| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_59661| Best HMM Match : PMP22_Claudin (HMM E-Value=0.26)            29   3.0  
SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_52256| Best HMM Match : Man-6-P_recep (HMM E-Value=2.4e-06)
          Length = 237

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +2

Query: 521 ELQIFSLAEPNNLVLAFY-----SQSACLKQIDSGRSVGSTLLIIFFSFVIFYLVLGVCT 685
           E  I++ + PN     +Y     +++AC  +  S  S GS +LI+F      YL LG   
Sbjct: 99  EEYIYNSSSPNQGDECYYLFEINNKAACTVK-PSSLSPGSIILIVFVIVACVYLFLGFLY 157

Query: 686 KKFLMGATGVEVIP 727
           ++F++GA G+E IP
Sbjct: 158 QRFIVGAKGMEQIP 171


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/73 (24%), Positives = 28/73 (38%)
 Frame = +1

Query: 58  YLFMSCLYCSIFPIYGEDVCLKKSACVCEFSNGTGIDLSSASKSTFFSAQTFEVAPATNA 237
           Y +  C YC  +  Y    C     C C  +  T    ++A+ +T  +A T      T  
Sbjct: 495 YCYYCCYYCYCYYYYHHYYCCYYCCCSCTATTATATTTATAT-TTATTAATATTTTTTTT 553

Query: 238 IELSTYTIILAMI 276
              +T T I+  I
Sbjct: 554 TNTTTNTTIIIWI 566


>SB_31982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 614 SVGSTLLIIFFSFVIFYLVLGVCTKKFLMGATGVEVIPQSRI 739
           S+ STLL+I  + V  Y+VLGV  + ++   T +  +P + +
Sbjct: 106 SLSSTLLLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGV 147


>SB_59661| Best HMM Match : PMP22_Claudin (HMM E-Value=0.26)
          Length = 680

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 462 VYTHGPSNTTVLLICSCLM 518
           V+TH P NT VL +C+C++
Sbjct: 636 VFTHLPCNTNVLSVCNCVI 654


>SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 315 CTVPTAICRHREVLHAVDGTPDTYKKDLNVYDLIGNTDKS 434
           C +P   CR+  V+   D   D Y   LN++   G T  S
Sbjct: 144 CVLPGEGCRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNS 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,819,888
Number of Sequences: 59808
Number of extensions: 468421
Number of successful extensions: 1206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)