Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00487
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-9|CAB03991.1|  430|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z50756-2|CAA90638.1|  473|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z81486-9|CAB03991.1|  430|Caenorhabditis elegans Hypothetical
           protein C53A5.11 protein.
          Length = 430

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 327 TAICRHREVLHAVDGTPDTYKKDLNVYDL 413
           T+ C H + ++AV G   TY   + +YD+
Sbjct: 251 TSACIHEDAIYAVGGYDATYMSSVEIYDI 279


>Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical
           protein F08A8.6 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 733 RLGYNFHTSCTHQEFLGANSEDQVKYDKRKEYY 635
           R+ YN H++ +  E  G  S  Q  ++K K++Y
Sbjct: 210 RMMYNLHSNVSPHELEGYRSRFQTIFEKTKQFY 242


>Z50756-2|CAA90638.1|  473|Caenorhabditis elegans Hypothetical
           protein T08D10.3 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 26/84 (30%), Positives = 40/84 (47%)
 Frame = +2

Query: 449 RRCSSLHSWSIKYNSSPHLLLSDGELQIFSLAEPNNLVLAFYSQSACLKQIDSGRSVGST 628
           RR    H + +   SSP L      LQ+ S  EP N  +     S  +K I   R+  + 
Sbjct: 384 RRNVVFHEFKLS-KSSPQLSEECINLQVISSDEPVNGQI-----SVQIKPIQR-RTHLNI 436

Query: 629 LLIIFFSFVIFYLVLGVCTKKFLM 700
           +L + FSFV+  L++  C K+ L+
Sbjct: 437 ILAVTFSFVMCMLLIRQCAKQILL 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,902
Number of Sequences: 27780
Number of extensions: 372954
Number of successful extensions: 1056
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)