Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00487
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   4.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 25  KIYKMDFRIKIYLF-MSCLYCSIFPIYGEDVCLK 123
           KI + D RI  Y   + C  CS +   GE+VCL+
Sbjct: 134 KILRND-RIDSYKSNLKCDKCSTYQSNGEEVCLE 166


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 635 LTKSSQQIFRNQFALNKHFASRKLE 561
           +T + QQ+ R    L +H A  K++
Sbjct: 11  ITANRQQVMRQNMKLKRHLAQDKVK 35


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 593 KQIDSGRSVGSTLLIIFFSFVIFYLVLGVC 682
           KQI++G +  S  LI+  S +      G C
Sbjct: 42  KQIETGLAFPSITLIVLGSIIFVISFFGCC 71


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 348 EVLHAVDGTPDTYKKDLNVYDL 413
           E L    G P+ YK+DL+  D+
Sbjct: 5   EGLGVTTGQPNLYKQDLSKLDV 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,687
Number of Sequences: 438
Number of extensions: 4407
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)