Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00487
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40316.1 68415.m04968 expressed protein                             32   0.35 
At1g17620.1 68414.m02179 expressed protein                             28   5.7  
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c...    27   9.9  
At3g29034.1 68416.m03630 expressed protein                             27   9.9  
At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    27   9.9  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    27   9.9  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    27   9.9  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    27   9.9  
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi...    27   9.9  

>At2g40316.1 68415.m04968 expressed protein
          Length = 214

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 581 SACLKQIDSGRSVGSTLLIIFFSFVIFYLVLGVCTKKFLMGATGVEVIP 727
           +A +    SG    STLLII       YLV G   + F +G  G++VIP
Sbjct: 127 AAAISGHSSGWGWFSTLLIIILCLFGAYLVGGAVYRYFSLGIRGIDVIP 175


>At1g17620.1 68414.m02179 expressed protein
          Length = 264

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 393 DLNVYDLIGNTDKSVFSAKGDAVVYTHGPSNTTVL 497
           D+ +Y      D  V   KG    ++HG  NTT L
Sbjct: 137 DITLYKASTGGDDDVVIGKGTIAAFSHGKKNTTTL 171


>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 673

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 249 TKFNRICCWSYFKSLSRKKCRFTGRRQIYSGAVGKLTNARTF 124
           TKF+    W        ++   TG RQI   A+GK    + F
Sbjct: 405 TKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIF 446


>At3g29034.1 68416.m03630 expressed protein 
          Length = 86

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 557 LVLAFYSQSACLKQIDSGRSVGSTLLIIFFSFVI 658
           L L  YSQ+     +D G+S+G+ L ++FF  ++
Sbjct: 50  LTLGAYSQT----YVDPGKSIGAGLFVLFFGLLV 79


>At1g55350.4 68414.m06326 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 372 YHQQHEALLCVCKWLSVLYKYC*QL*NSVLEVYHSKDDSISTK 244
           Y   H + +C+  +  VL  +C     S LEV  S+DD + TK
Sbjct: 837 YRFSHSSAVCLMIFSVVLVAFCG---TSYLEVVKSRDDQLPTK 876


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 372 YHQQHEALLCVCKWLSVLYKYC*QL*NSVLEVYHSKDDSISTK 244
           Y   H + +C+  +  VL  +C     S LEV  S+DD + TK
Sbjct: 837 YRFSHSSAVCLMIFSVVLVAFCG---TSYLEVVKSRDDQLPTK 876


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 372 YHQQHEALLCVCKWLSVLYKYC*QL*NSVLEVYHSKDDSISTK 244
           Y   H + +C+  +  VL  +C     S LEV  S+DD + TK
Sbjct: 837 YRFSHSSAVCLMIFSVVLVAFCG---TSYLEVVKSRDDQLPTK 876


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 372 YHQQHEALLCVCKWLSVLYKYC*QL*NSVLEVYHSKDDSISTK 244
           Y   H + +C+  +  VL  +C     S LEV  S+DD + TK
Sbjct: 837 YRFSHSSAVCLMIFSVVLVAFCG---TSYLEVVKSRDDQLPTK 876


>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein low similarity to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 343

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 452 RCSSLHSWSIKYNSSPHLLLSDGELQIFSLAEPNNLVLAFYSQSACLKQIDSGR 613
           +C  L     KY SSP  + +  +L    LA+P + +     ++  +  I SG+
Sbjct: 86  KCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPESAIDVACGKNGAIFGISSGK 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,611
Number of Sequences: 28952
Number of extensions: 323252
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)