Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00484X
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 97 1e-21
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 94 5e-21
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 0.39
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 2.8
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 3.7
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 3.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 3.7
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 3.7
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 4.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 24 6.4
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 24 6.4
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 24 8.5
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 96.7 bits (230), Expect = 1e-21
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = +1
Query: 70 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 249
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 250 NG 255
NG
Sbjct: 66 NG 67
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 94.3 bits (224), Expect = 5e-21
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +1
Query: 70 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 249
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 250 NG 255
NG
Sbjct: 66 NG 67
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 0.39
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -1
Query: 243 HMTGLLVGTVTDVGHQVLTLESPADSVVNTSRF-TPIPLKFV--IAIRLMPDKSLRP 82
H+ G+ T + G + +T DS + + TP+P+KFV IA+ MP +LRP
Sbjct: 395 HLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIAMHSMPRVALRP 449
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 2.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 219 FQQEDPSYAPKWFRKVLVHNVKELEI**CKQEYCAE 326
FQ P + P +F VLVH V +I CK +Y A+
Sbjct: 402 FQSPLPYFYPCFFFVVLVHRVSR-DIKKCKAKYGAD 436
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 3.7
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 61 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRH 240
R T VK+R K I+ S+ + KP G R R+ K Y +P G + +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALP--GLRTKLRRNF 595
Query: 241 MLPNGSVRS 267
LP+ V++
Sbjct: 596 DLPSDHVKA 604
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 30 NIQDGYKTCLQADNRQKEDEEIYQASIGS 116
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 3.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 94 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 30 NIQDGYKTCLQADNRQKEDEEIYQASIGS 116
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 2 RGSLSR--FLKKHTRWL*DLFTGRQSSKRGRRDL 97
RGS SR F KKH RW L + ++ R L
Sbjct: 931 RGSSSRGAFYKKHNRWTEGLISAAKAVARATTTL 964
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 204 QHRLRFQQEDPSYAPKWF 257
+ R+R Q E P ++P+WF
Sbjct: 1248 KRRMREQGEMPPWSPRWF 1265
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 96 KSLRPLFDDCRPVNRSYSHLVC 31
+S++ + DDC P N +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 165 VVNTSRFTPIPLKFVIAIRLMP 100
++ R P+PL F I++ LMP
Sbjct: 48 LIPKDRPVPLPLNFDISVHLMP 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,435
Number of Sequences: 5004
Number of extensions: 27899
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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