Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00484X
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 103 3e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 100 7e-22
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 100 7e-22
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 73 5e-14
08_02_1245 - 25557201-25558199 27 4.5
11_06_0574 + 25098231-25099970 27 6.0
11_06_0570 + 25055864-25057603 27 6.0
05_05_0377 - 24498664-24500215,24500306-24500643 27 6.0
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 7.9
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 26 7.9
07_01_0565 + 4188387-4190570 26 7.9
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 103 bits (248), Expect = 3e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +1
Query: 28 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 207
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 208 IGYGSNKKTRHMLPN 252
IGYGS+KKTRH LPN
Sbjct: 378 IGYGSDKKTRHYLPN 392
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEI 296
Y P F+K +VHNV ELE+
Sbjct: 389 YLPNKFKKFVVHNVSELEL 407
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 99.5 bits (237), Expect = 7e-22
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 220 SNKKTRHMLPN 252
S+KKTRH LPN
Sbjct: 60 SDKKTRHYLPN 70
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEI**C-KQEYCAEIAHGVSSR 350
Y P F+K +VHNV ELE+ + YCAEIAH VS++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTK 104
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 99.5 bits (237), Expect = 7e-22
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 220 SNKKTRHMLPN 252
S+KKTRH LPN
Sbjct: 60 SDKKTRHYLPN 70
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEI**C-KQEYCAEIAHGVSSR 350
Y P F+K +VHNV ELE+ + YCAEIAH VS++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTK 104
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 73.3 bits (172), Expect = 5e-14
Identities = 30/39 (76%), Positives = 36/39 (92%)
Frame = +1
Query: 136 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 252
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPN 137
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 240 YAPKWFRKVLVHNVKELEI**C-KQEYCAEIAHGVSSR 350
Y P F+K +VHNV ELE+ + YCAEIAH VS++
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTK 171
Score = 29.9 bits (64), Expect = 0.64
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 132
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>08_02_1245 - 25557201-25558199
Length = 332
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 207 VGHQVLTL-ESPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVC 31
+G +++ L P D V++T F K + + DK+ D C P ++H +
Sbjct: 153 IGCRIVYLCREPKDVVISTWHFMN---KVIEGFSIDFDKAFELFVDGCSPFGPIWNHYLG 209
Query: 30 FFKKRDSEP 4
++ K EP
Sbjct: 210 YWNKHVEEP 218
>11_06_0574 + 25098231-25099970
Length = 579
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 211 GYGSNKKTRHMLPNGSVRS*FTMLKSWKSDDANRSTAQRSL 333
G GS++ T ML +V +++ W+SDD R + SL
Sbjct: 11 GSGSSRSTNGMLEE-TVADVAALVEKWRSDDDGRRRRRSSL 50
>11_06_0570 + 25055864-25057603
Length = 579
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 211 GYGSNKKTRHMLPNGSVRS*FTMLKSWKSDDANRSTAQRSL 333
G GS++ T ML +V +++ W+SDD R + SL
Sbjct: 11 GSGSSRSTNGMLEE-TVADVAALVEKWRSDDDGRRRRRSSL 50
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 26.6 bits (56), Expect = 6.0
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Frame = -1
Query: 270 LGPYGTIWEHMTGLLVGTVTDVGHQVL--TLESPADSVVNTSRFTPIPLKFVIAIRLMPD 97
L P+G T T GH VL L SPA TP+P L +
Sbjct: 472 LAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGG-------TPVPASVFEDCCLAVE 524
Query: 96 KSLRPLFDDCRPVNRSYSHL 37
+ L ++ CR +RS L
Sbjct: 525 EGLNSVYRQCRAADRSIGPL 544
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 100 RHQSDRYDKLKRNWRKPRGIDN 165
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 255 TIWEHMTGLLVGTVTDVGHQVLTLESPADSVVNTSRFTPIP 133
TIW + G VG V D H+VL + VV+ S F+ P
Sbjct: 517 TIWHYHGGCHVGKVVDQQHRVLGVSGV--RVVDGSTFSRSP 555
>07_01_0565 + 4188387-4190570
Length = 727
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 75 DDCRPVNRSYSHLV-CFFKKRDSE 7
DDC+P + +YSH++ CF + + E
Sbjct: 539 DDCKPDSCTYSHMIPCFVDEGNIE 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,372,048
Number of Sequences: 37544
Number of extensions: 182067
Number of successful extensions: 518
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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