Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00484X
         (366 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   9e-29
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  122 bits (294), Expect = 9e-29
 Identities = 52/70 (74%), Positives = 62/70 (88%)
 Frame = +1

Query: 46  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 225
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 226 KKTRHMLPNG 255
           KKTR ++P+G
Sbjct: 62  KKTRFLMPDG 71



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query: 246 PKWFRKVLVHNVKELEI-**CKQEYCAEIAHGVSSR 350
           P  F+K +VHNVKELE+     + Y AEIAH VSSR
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSR 104


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 31  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 210
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 211 GYGSNKKTRHML 246
           G  S K  R +L
Sbjct: 72  GRLSAKPERDVL 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,081,909
Number of Sequences: 59808
Number of extensions: 219576
Number of successful extensions: 714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)