Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00484X
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   154   4e-40
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   3.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  154 bits (373), Expect = 4e-40
 Identities = 68/72 (94%), Positives = 70/72 (97%)
 Frame = +1

Query: 40  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 220 SNKKTRHMLPNG 255
           SNKKTRHMLP G
Sbjct: 61  SNKKTRHMLPTG 72



 Score = 46.4 bits (105), Expect = 1e-07
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = +3

Query: 246 PKWFRKVLVHNVKELEI**CK-QEYCAEIAHGVSSR 350
           P  FRKVLVHNVKELE+   + +++CAEIAHG SS+
Sbjct: 70  PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSK 105


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 171 PQAIQGSILDAQHRLRFQQED 233
           P+    S LD +HR+ + +ED
Sbjct: 182 PRDYTASDLDVEHRVAYWRED 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,979
Number of Sequences: 438
Number of extensions: 1877
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)