Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00483
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    26   4.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   4.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   8.5  

>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 EGHDSDMAFCASLRELN 364
           EGHD DM     LRELN
Sbjct: 100 EGHDEDMVDILKLRELN 116


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 376 IHEYIELSETRAECHVRVVSFLYISHSFG 290
           ++  +ELS+ R EC   +   +Y+S+S G
Sbjct: 7   LYRVLELSKARVECVFELGGLVYVSNSNG 35


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 586 FCDEWIAIMEAYGKWSDGTNNDKRL 660
           +  EW A +E  G+W D  N+ K L
Sbjct: 121 YASEWRATVERLGRWIDFDNDYKTL 145


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 471 LFSKSWYISGWVFVMSYVSGLTRWPKSSSLLTYMNILS 358
           LF++ WY   W   ++    +  W + + L+   NI+S
Sbjct: 807 LFNR-WYSESWANYLTICGAVIGWTRGTGLMAPNNIVS 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,044
Number of Sequences: 5004
Number of extensions: 73465
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)