Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00483
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31)       53   3e-07
SB_54210| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)                      30   2.3  
SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)        30   2.3  
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   3.9  
SB_28494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)                     29   5.2  
SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)                    29   5.2  
SB_53026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_32202| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     29   5.2  
SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)                  29   5.2  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 28   6.9  
SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.9  
SB_23897| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13)                   28   9.1  

>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +3

Query: 6   INSACDYLFSVDS-LSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYAR 182
           I S  DYLF VD+ +       L+ L+     ++ P +++  K WSNFWG +   G+YAR
Sbjct: 314 IQSGSDYLFVVDANVVYTNKKSLKLLIEQNRPLLVPKMSKHAKLWSNFWGTIGDDGYYAR 373

Query: 183 SADYMDIVYGVIKGVWNVPFIT 248
           + DY+DIV     G+WN  ++T
Sbjct: 374 AEDYIDIVEYRRVGIWNSAYVT 395



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = +2

Query: 284 PKAKAVTYVQEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQLF 463
           PK K   Y     + D++F   LR+  IFMYV+N   FG L   +T      H D++Q+F
Sbjct: 406 PKLKHA-YSYGNLEPDLSFSKYLRDNGIFMYVTNMHYFGRLKETDTVTTNHLHNDLWQIF 464

Query: 464 ENNM 475
           +N +
Sbjct: 465 DNQI 468


>SB_53853| Best HMM Match : Glyco_transf_25 (HMM E-Value=4.8e-31)
          Length = 534

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
 Frame = +3

Query: 21  DYLFSVDSLSRLESNV-LRYLLSSGYDVIAPMLTRPGK--AWSNFWGALNSAGFYARSAD 191
           DYLF VD  + L + + LR L+     V++PML   G   A+SNFWG ++ +G+Y R+  
Sbjct: 74  DYLFVVDCDNFLFNPITLRQLMHEEKTVVSPMLEVFGNKSAYSNFWGGMDESGYYKRTDQ 133

Query: 192 YMDIVYGVIKGVWNVPFI--TNCIC*RCRCSERLR 290
           Y  I+     G + VP +  T  +  R R S  LR
Sbjct: 134 YFTILNREKVGTFEVPMVHSTYLVDLRRRASSELR 168



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 320 HDSDMAFCASLRELNIFMYVSNEEDFGHLVNP 415
           HD  + F  S R   + +++ N+  +GHL+ P
Sbjct: 180 HDDILVFAHSARMAGVKLHIINKHIYGHLILP 211


>SB_54210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -1

Query: 659 KRLSLLVPSLHFPYASIIAIHSSQNLSDIKGNQ*TSVHGI--KCFRSSSKLASIQGADNG 486
           ++LS + PS+    + ++  HS+Q+L+ I  +   SV  I  +  RSSS L   + A  G
Sbjct: 250 QKLSAVAPSVPCQQSRLVRCHSAQHLNTISSSSEDSVVNIFRRLRRSSSALNLFEAARKG 309

Query: 485 *SIPYYSRRAGTYRDGFL 432
            S+   S     YR+  L
Sbjct: 310 ISVESNSSYV-PYRNSLL 326


>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1027

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 129 KAWSNFWGALNSAGFYARSADYMDIVYGVIKGVWNVPFITNCI 257
           ++W    G+   AG  AR   Y     GV+ GVW VP +T CI
Sbjct: 876 RSWGVRSGSRAVAGGQARRGCYR----GVLGGVWGVPDMTQCI 914


>SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)
          Length = 1423

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 4   ASTVHATICSLWTACLVLKVTFYVICSLLAMTSSRRC*RVLAKPGPTSGELSTLLDFMRD 183
           AS +   +CSL   CL+++ T  V    L+  +SR     L +    SG ++ LL  +RD
Sbjct: 502 ASVITTALCSLSKRCLIMENTARVAGDRLSDLTSRDGDWFLEELCSMSGNVTQLLSLLRD 561


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +2

Query: 392 DFGHLVNPETYDITKTHPDMYQLFENNMEWTTRYLHPEY 508
           D+ ++   + + I +++P +Y    +N EW  R++ P++
Sbjct: 479 DWSYIFGDKKHKIRRSYP-LYHSIHDNFEWMKRFVDPQF 516


>SB_28494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 350 NLYSCSEVTKRVAYVTLVRSHL 371


>SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)
          Length = 242

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 196 NLYSCSEVTKRVAYVTLVRSHL 217


>SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)
          Length = 363

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 317 NLYSCSEVTKRVAYVTLVRSHL 338


>SB_53026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 155 NLYSCSEVTKRVAYVTLVRSHL 176


>SB_32202| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 259

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 213 NLYSCSEVTKRVAYVTLVRSHL 234


>SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)
          Length = 287

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 241 NLYSCSEVTKRVAYVTLVRSHL 262


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 281 APKAKAVTYVQEGHDSDMAFCASLRELNIFMYVSNEEDFGHLVNPETYDITKTHPDMYQL 460
           AP+     Y + G      +CA  RE     +   E+   +L   + + IT ++P  YQL
Sbjct: 700 APRTPRRWYSKVGRQQRKRYCAYRREFLALKWAVTEKFHDYLYGRQFHVITDSNPLTYQL 759


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 776 NLYSCSEVTKRVAYVTLLRSHL 797


>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -2

Query: 577 TSRGTNKHQCTALNVSDPLRS*PVFRVQITGSPFHIILEELVHIGMGFCYVICFRINEMA 398
           +S+GT    C  +   D     P   V      +HI+LE+ + +    C  I     +  
Sbjct: 69  SSKGTRIADCVFICTQDQFHCGPA--VSFASRGYHILLEKPMSVEEKECEEIAMACQKAN 126

Query: 397 EILFVAHIHEY 365
            IL V H+  Y
Sbjct: 127 VILAVCHVLRY 137


>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 423

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 377 NLYSCSEVTKRVAYVTLLRSHL 398


>SB_23897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 2   NLYSCSEDTKRVAYVTLVRSHL 23


>SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 201 CPYNLRISHKIQQS*ELPRSWTRLCQDA-LASAR*RHSQKRANNVKRYFQDETGCPQRTD 25
           C Y   + H++  +       TR+ +D  +   + R   +R  N K+Y QD +G P    
Sbjct: 196 CGYKGHVMHELMHALGFLHEQTRMDRDEHITVHKDRIFPERMLNFKKYHQDTSGLPYDFR 255

Query: 24  SRMH 13
           S +H
Sbjct: 256 SLVH 259


>SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13)
          Length = 269

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 360 SIYSCM*ATKRISAISLIRKHM 425
           ++YSC   TKR++ ++L+R H+
Sbjct: 223 NLYSCSEDTKRVAYVTLVRSHL 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,395,341
Number of Sequences: 59808
Number of extensions: 571175
Number of successful extensions: 1306
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)