Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00483
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57450.2 68418.m07178 DNA repair family protein contains simi... 33 0.26
At5g57450.1 68418.m07177 DNA repair family protein contains simi... 33 0.26
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 5.6
At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family pr... 28 5.6
At3g43670.1 68416.m04655 copper amine oxidase, putative similar ... 28 5.6
At3g03310.1 68416.m00329 lecithin:cholesterol acyltransferase fa... 28 5.6
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr... 27 9.8
At3g29270.2 68416.m03675 expressed protein 27 9.8
At3g29270.1 68416.m03674 expressed protein 27 9.8
>At5g57450.2 68418.m07178 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 32.7 bits (71), Expect = 0.26
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +3
Query: 9 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARS 185
N D + + D LS L LRYL SSG V+ P L G AW+N +NS F +RS
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN---CVNSRFFISRS 250
>At5g57450.1 68418.m07177 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 32.7 bits (71), Expect = 0.26
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +3
Query: 9 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARS 185
N D + + D LS L LRYL SSG V+ P L G AW+N +NS F +RS
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN---CVNSRFFISRS 250
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 166 AELRAPQKLDQALPGRVSIGAMT-S*PEESK*RKTLLSRRDRLSTEN 29
A LR+PQ+L PGR +G+M S ++ + L RR S+ N
Sbjct: 677 AVLRSPQQLSHLFPGRSPMGSMPGSFDSPNERYRNLSHRRSESSSSN 723
>At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family
protein
Length = 190
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 547 TALNVSDPLRS*PVFRVQITGSPFHIILEELVHIGMGFCYVICFRINEM-AEI 392
++++VS P R P +Q TGS FHI L + FC +I E+ AEI
Sbjct: 96 SSVDVSVP-RKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEI 147
>At3g43670.1 68416.m04655 copper amine oxidase, putative similar to
copper amine oxidase [Cicer arietinum]
gi|3819099|emb|CAA08855
Length = 687
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 443 PDMYQLFENNMEWTTRYLHPEYW 511
P M F NN W TRY E W
Sbjct: 581 PQMRGAFTNNQIWVTRYNRSEQW 603
>At3g03310.1 68416.m00329 lecithin:cholesterol acyltransferase
family protein / LACT family protein weak similarity to
LCAT-like lysophospholipase (LLPL) [Homo sapiens]
GI:4589720; contains Pfam profile PF02450:
Lecithin:cholesterol acyltransferase
(phosphatidylcholine-sterol acyltransferase)
Length = 447
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 491 YLHPEYWLTSKRIGNI*CRALMFIGSP*CLIDSVMSG 601
YLHPE + SK + A F G+P C+ DS+++G
Sbjct: 188 YLHPEAF--SKYVNKWITIATPFQGAPGCINDSILTG 222
>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 390
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 171 FYARSADYMDIVYGVIKGVWNV 236
FY RS D D VY I+ WNV
Sbjct: 245 FYVRSNDSKDSVYDPIREKWNV 266
>At3g29270.2 68416.m03675 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 613 PL*RSTHHRIY-QTSRGTNKHQCTALNVSDPLRS*PVFRVQIT 488
P + HHR + SR N H+ N+ LR VF VQ+T
Sbjct: 163 PCLHNRHHRSQPEPSRSVNDHRIPRDNIQTSLRKSLVFFVQLT 205
>At3g29270.1 68416.m03674 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 613 PL*RSTHHRIY-QTSRGTNKHQCTALNVSDPLRS*PVFRVQIT 488
P + HHR + SR N H+ N+ LR VF VQ+T
Sbjct: 163 PCLHNRHHRSQPEPSRSVNDHRIPRDNIQTSLRKSLVFFVQLT 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,590,104
Number of Sequences: 28952
Number of extensions: 387458
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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