Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00479
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   110   1e-25
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   110   1e-25
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   1.5  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   7.8  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   7.8  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  110 bits (264), Expect = 1e-25
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IV+ L GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K   GKILGFF+
Sbjct: 73  GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  110 bits (264), Expect = 1e-25
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IV+ L GR+NK
Sbjct: 61  IVIQLNGRINK 71



 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K   GKILGFF+
Sbjct: 73  GVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 227 VNLTGRLNKLVSFHLVLMFPSTILKDGLICS 319
           V+L  +   L  F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 320 PHDSLVT*SLQQVVASWTMKKPE 388
           P+ S +T SL Q +  W +++PE
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPE 176


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 174 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 34
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,856
Number of Sequences: 5004
Number of extensions: 31388
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)