Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00479
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          122   1e-28
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   122   2e-28
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           75   3e-14
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.36 
10_08_0314 + 16683473-16683564,16683945-16683945,16684057-166842...    27   5.8  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  122 bits (295), Expect = 1e-28
 Identities = 57/71 (80%), Positives = 65/71 (91%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 44/58 (75%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKILGFFF 426
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++ GK+LGFF+
Sbjct: 73  GVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  122 bits (293), Expect = 2e-28
 Identities = 56/71 (78%), Positives = 65/71 (91%)
 Frame = +2

Query: 41  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 220
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 221 IVVNLTGRLNK 253
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +1

Query: 256 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKIL 414
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++ GK L
Sbjct: 73  GVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 33/64 (51%), Positives = 47/64 (73%)
 Frame = +2

Query: 56  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 235
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 236 TGRL 247
            GR+
Sbjct: 65  HGRI 68



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 25/64 (39%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +1

Query: 235 HRQTKQVGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLEGKI 411
           H + K    ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++ G++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 412 LGFF 423
           LG+F
Sbjct: 125 LGYF 128


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
 Frame = +2

Query: 197 VDDHRAGKIVVNLTGRLNK--LVSF 265
           VDDH++G+I++   GRLNK  ++SF
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISF 936


>10_08_0314 +
           16683473-16683564,16683945-16683945,16684057-16684268,
           16684655-16684747,16685106-16685160,16685480-16685566
          Length = 179

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 131 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKLVSFHLVLMFPSTILKD 304
           S +++K L V++    +G + ++   RA + + +  G      +FHL+  FP+ ++ D
Sbjct: 36  SVIVLKCLFVLLHDKKMGIYALIYVLRACRYIEDDEGIRKYFAAFHLLGSFPAAVIID 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,510
Number of Sequences: 37544
Number of extensions: 199174
Number of successful extensions: 395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)